Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241971g00002 ATGTTAGGCAAATTCTACGGTATAGATGATGATTTACCATCTTCGCTAGCATGTGAGAGTGAAACCTTTCTACAAAAAGCAATTGAACAAGAAGGGAGAGCCACAATCATGGATACAATCCAAGAGATTCAAGAGAGGCATGACACAGTTATGGAGATAGAGAGGAGCCCCAATGAGCTTCACCAAGTGTTCATGGACATGGCTGGTTTGGTCCAATCACAAGGGGAGCAAATAGATGACATAGAGAGCCACGTGGCAAGAGCCACGTGGCAAGAGCCAATTCGTACGTCCGTGGTGGGGTCCAGCAGCTCCAGGTTGCAAGGAAGCACCAGAAGAATACCCGGAAATGGACCTTCATTGCCATCATCATATTGA 375 0.4667 MLGKFYGIDDDLPSSLACESETFLQKAIEQEGRATIMDTIQEIQERHDTVMEIERSPNELHQVFMDMAGLVQSQGEQIDDIESHVARATWQEPIRTSVVGSSSSRLQGSTRRIPGNGPSLPSSY 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241971g00002 124 Gene3D - 7 91 - -
Stsc241971g00002 124 CDD SNARE_syntaxin1-like 39 89 - -
Stsc241971g00002 124 SMART tSNARE_6 35 109 IPR000727 -
Stsc241971g00002 124 PANTHER SYNTAXIN 29 89 IPR045242 -
Stsc241971g00002 124 SUPERFAMILY t-snare proteins 24 89 IPR010989 GO:0016020|GO:0016192
Stsc241971g00002 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 40 85 IPR000727 -
Stsc241971g00002 124 MobiDBLite consensus disorder prediction 97 124 - -
Stsc241971g00002 124 Pfam Syntaxin 19 75 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241971g00002 Stsc-Chr241971 8587 9727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241971g00002 19 89 SNARE and Associated Proteins AT1G61290 67.606 2.20e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241971g00002 K08486 - gmx:100793347 123.25