Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241968g00001 ATGAAGATCCAGTGCGACGTGTGTGGCAAGGAAGAGGCATCGGTGTTCTGCACCGCCGATGAAGCCGCCCTATGCGGCGGTTGCGACCACCGTGTCCACCATGCCAACAAGCTTGCATCCAAACACCAACGCTTCTCTCTTCACCGTCTTTCTACAAAACAACAATTCCCTCTCTGTGATGTTTGCAAGGAGAGAAGGGCCTATGTGTTCTGCCAGCAAGACAGAGCAATTCTATGCAAAGATTGTGATGTTCCAATTCATTCTGCAAATGAACACACAAAAAAGCATACTAGATTCCTTGTCACCGGTGTTAAGCTCGCAGATTCTGCTAAACTCTATTCAGAAGCCTCTACGACTGCTCCGCCTTTGACGGGGAGCAGTAGTAGTGACTCTAATTCCAAAGCTTCTCAGGTACCAAAGATTCTGGTACCTGAGATAGTTTCTTCGGCGGCATCAACCGGACTTTCCCCGGTTAGCGGGGGAAGCCTGATTGGTGTTGCCAAAGAAGGTGCTTCCGCAGCAAGTACTACTACTAGTAGCATATCTGAGTACTTGATAGAGACTATACCTGGCTGGCAGGTTGAAGACTTTCTTGATTCATCTAATGCTCCATTTGGTTTCTCCAAGGGTGGTGATGAGATTTTTTCAGTGTTTGATGGTGGTATTGATGGAAATATGTATTCATTCTCAACAATGGAGAAGATTGGGATGTGGGTTCCTCAAGCACCACCACCACCACCTCTTCTATATGCTTCACAATTAGGACAATTTTGTGAGATCACAAAGGATGTCACAAACAACAACATCAAAGGTAGTAGCAGATCAAGGTTGGGGGATGATAATTTCATTGTTCCTCAGATTAGTCCTCAATCCAAGAACACTAAGAGACCAAGATATCTATGGTAG 906 0.4558 MKIQCDVCGKEEASVFCTADEAALCGGCDHRVHHANKLASKHQRFSLHRLSTKQQFPLCDVCKERRAYVFCQQDRAILCKDCDVPIHSANEHTKKHTRFLVTGVKLADSAKLYSEASTTAPPLTGSSSSDSNSKASQVPKILVPEIVSSAASTGLSPVSGGSLIGVAKEGASAASTTTSSISEYLIETIPGWQVEDFLDSSNAPFGFSKGGDEIFSVFDGGIDGNMYSFSTMEKIGMWVPQAPPPPPLLYASQLGQFCEITKDVTNNNIKGSSRSRLGDDNFIVPQISPQSKNTKRPRYLW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241968g00001 301 MobiDBLite consensus disorder prediction 280 301 - -
Stsc241968g00001 301 CDD Bbox1_BBX-like 5 47 - -
Stsc241968g00001 301 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc241968g00001 301 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Stsc241968g00001 301 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Stsc241968g00001 301 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Stsc241968g00001 301 CDD Bbox1_BBX-like 58 101 - -
Stsc241968g00001 301 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 292 - -
Stsc241968g00001 301 FunFam B-box zinc finger protein 21 1 99 - -
Stsc241968g00001 301 Gene3D Classic Zinc Finger 1 100 - -
Stsc241968g00001 301 SMART bboxneu5 54 101 IPR000315 GO:0008270
Stsc241968g00001 301 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241968g00001 Stsc-Chr241968 14834 16766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241968g00001 1 301 C2C2-CO-like Transcription Factor Family AT1G75540 42.730 2.94e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc241968g00001 zf-B_box 8.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241968g00001 - - lja:Lj5g3v0165540.1 323.168