Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241965g00002 ATGCCGGCAACACTCAACCTTTCCGCCGTCCCCGCCGTAAAATTCTCCTTCTCCAGCGACAACCGCGCCTCCAACGGAAGATTCCACCGCCGTTCTCCGATCCGCTCCGTCGCTTCTCCGGTGACGGCCACATCGGCTAGCCTCTACGAGGTATTGCGAGTCGAGCAGAACGCGTCGCCGACGGAGATCAAATCTGCCTTCCGGAGCCTGGCGAAGCTCTACCACCCCGACGTTGCGGCGGTGAGGCGGTTGCCGGATTCTGACGGCAATTCCGGCACTTACGACGGCGACTTCATCGAGATACGGAACGCGTACGAGACGCTGTCAGATTCTTCAGCTAGAGCAATGTACGATCGGTCTCTGGCCTCCCGGCGGCGGAGGTTTCAGGCGCCGTTGAGCGTGAAAGGGTATTCCGGTCATTACACGACCCGAAAATGGGAAACGGACCAATGCTGGTAG 459 0.5991 MPATLNLSAVPAVKFSFSSDNRASNGRFHRRSPIRSVASPVTATSASLYEVLRVEQNASPTEIKSAFRSLAKLYHPDVAAVRRLPDSDGNSGTYDGDFIEIRNAYETLSDSSARAMYDRSLASRRRRFQAPLSVKGYSGHYTTRKWETDQCW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241965g00002 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 24 152 - -
Stsc241965g00002 152 Gene3D DnaJ domain 34 142 IPR036869 -
Stsc241965g00002 152 ProSitePatterns Nt-dnaJ domain signature. 98 117 IPR018253 -
Stsc241965g00002 152 PRINTS DnaJ domain signature 93 113 IPR001623 -
Stsc241965g00002 152 PRINTS DnaJ domain signature 49 67 IPR001623 -
Stsc241965g00002 152 PRINTS DnaJ domain signature 67 82 IPR001623 -
Stsc241965g00002 152 ProSiteProfiles dnaJ domain profile. 47 121 IPR001623 -
Stsc241965g00002 152 SMART dnaj_3 46 113 IPR001623 -
Stsc241965g00002 152 SUPERFAMILY Chaperone J-domain 44 124 IPR036869 -
Stsc241965g00002 152 Pfam DnaJ domain 48 118 IPR001623 -
Stsc241965g00002 152 CDD DnaJ 49 110 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241965g00002 Stsc-Chr241965 6434 6892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241965g00002 49 118 C2H2 Transcription Factor Family AT1G74250 39.437 4.14e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241965g00002 - - gmx:100798752 161.384