Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241964g00007 ATGGCCATGGAAGCTGCTGAGGCTTCCACCACACCACAGTTGGCGCTCGCTGATACTGACATCAACTGGGACAGGCTGGATAAGACCAAGTTCCATGTAATTGGTGCCATACTCTTCACTGCTCAATCAGCCTTGCTTCATCCAACAGCAGTGGTAAAGACAAGAATGCAAGTAGCTGGGTCTGGACTCTCTCAAATGCGCGGAATGTCGGTGTTTACTCATATTCTAAGGAATGATGGTGTTCCCGGAATCTTTAGAGGTTTTGGTACTTCTGCTATTGGATCAATGCCTGGGAGGGTCCTAGCTTTAACATCTCTTGAGATGTCGAAAGACATTATGCTGAAGTACACACAAGGTAGTGATATGCCGGAAGCTTCGAGAATTGGCCTTGCGAATGGTGTGGCCGGCATGTTTTCCAATCTTGTGTCCTGTGTATACTTTGTGCCTTTGGATGTGATCTGCCAGAGGTTAATGGTACAAGGTCTTCCTGGAACTGCTCCTTGCAGAGGACCATTTGATGTTATACGTAAAGTTTTGAAGGCCGAGGGTTTCCGAGGCTTGTATAGAGGTTTTGGATTAACTGCCATAACTCAGTCACCGGCATCCGCACTTTGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTGGGCTACAAAGATGATGCAGAGAACAAACCTTCACATTTTCAAATGGTGACAGTTCAAGCTACAGCAGGGATGGTGGCCGGCGCTTGTTCATCGGTTATCACTACTCCAATAGATACTGTAAAAACACGTCTTCAGGTTATGGACAACTATGGTTCTGGAAGACCATCAGTGCTGAAGACAACAAAGACTCTCCTTAAAGAAGATGGTTGGTGGGGATTTTACCGGGGCTTCGGACCTCGGTTTCTAAACATGTCACTTTACGGAACAACGATGATCGTTACTTATGAACTGATAAAGAGATTGTCAGTACAGTAG 975 0.4595 MAMEAAEASTTPQLALADTDINWDRLDKTKFHVIGAILFTAQSALLHPTAVVKTRMQVAGSGLSQMRGMSVFTHILRNDGVPGIFRGFGTSAIGSMPGRVLALTSLEMSKDIMLKYTQGSDMPEASRIGLANGVAGMFSNLVSCVYFVPLDVICQRLMVQGLPGTAPCRGPFDVIRKVLKAEGFRGLYRGFGLTAITQSPASALWWGSYGAAQHIIWRSLGYKDDAENKPSHFQMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTTKTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241964g00007 324 Gene3D Mitochondrial carrier domain 33 323 IPR023395 -
Stsc241964g00007 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 321 IPR018108 -
Stsc241964g00007 324 SUPERFAMILY Mitochondrial carrier 24 317 IPR023395 -
Stsc241964g00007 324 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 323 - -
Stsc241964g00007 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 112 IPR018108 -
Stsc241964g00007 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 215 IPR018108 -
Stsc241964g00007 324 Pfam Mitochondrial carrier protein 238 321 IPR018108 -
Stsc241964g00007 324 Pfam Mitochondrial carrier protein 34 116 IPR018108 -
Stsc241964g00007 324 Pfam Mitochondrial carrier protein 131 217 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241964g00007 Stsc-Chr241964 39232 42392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241964g00007 18 321 Chloroplast and Mitochondria Gene Families AT5G15640 51.634 1.69e-108 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241964g00007 K15121 - gmx:112997745 575.474