Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241964g00001 ATGATTGTGAGCCAGAATATGGTGGCGGAAGCGGAAATCATGTGTCAGCAGAGAATTCCGGTGCTTGATGTCAAGTATCGTCTCCTAACCGAATCGATGGAATCGGCTTTGAGTTGCTCTGAGTTGGTTAAAGATACCGTTTCGGAGACTCCTGCTACCACATTTACTCCAGCTGTTCGTTCTGGAAGCTGTGCTGATATTGGACCGAGGGGATCCATGGATGATGAGCACATTCAAATAGATGATCTAGCTGCCCACCTTGGATTTGTGTCCAAATACCCTATGCCGAGTGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTAATGCAGCTACTTTCGTTAAGAGGAATGCAATTAGATTATTTTTTGATGACGCCAAAATGCTGCAATCATATGATACAGATGTGCTTTTCCTAAAACGGTTGGAGGATTCTCATAGGAAAGCATTCTTAGGGGCAGACCTTGCCTTGGCTGGTGAACAGAGTGTTAGTGGTACTTGTGGGACAACGGCATTGACTGCCCTTATACTTGGAAGACATTTACTGGTTGCCAATGCTGGTGATTGTCGAGCAGTTCTTTGTAGGCGAGGAGTGGCAGTTGAGATGTCTCATGATCACAGACCGAGTTATTTACCAGAACGGAGGAGAGTGGAAGAGTTAGGTGGTTTCATCTATGATGGGTATCTCAATGGTGATCTTTCTGTCACCCGTGCGCTTGGTGATTGGAAGTTGAAGTATCCAGTTGGCACTGCATCGCCTCTTATTGCCGATCCAGATATTCAAGTGGTTACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTATTTGGGATGTAATGTCAAGCCAGGAAGCAGTTAGCTTTGTGCGGCGAGGATTGAGAAGGCATGATGATCCACAGCAATGTGCCAAAGAGCTAGTTAAGGAAGCATTGCGCCTCAACACAACAGATAATCTTACTGTGATTGTTGTATGCTTGTCAACGGTGGAAAAGATTGTTGAATCTATCCCACCCCATAGGCGAAGATTCAGAGCTTGCTCACTGTCTGAAGAGGCCCGAAGTAGATTGAAGAGCTTACTTGAAGGAAATTAA 1104 0.4538 MIVSQNMVAEAEIMCQQRIPVLDVKYRLLTESMESALSCSELVKDTVSETPATTFTPAVRSGSCADIGPRGSMDDEHIQIDDLAAHLGFVSKYPMPSAFYAVFDGHGGPNAATFVKRNAIRLFFDDAKMLQSYDTDVLFLKRLEDSHRKAFLGADLALAGEQSVSGTCGTTALTALILGRHLLVANAGDCRAVLCRRGVAVEMSHDHRPSYLPERRRVEELGGFIYDGYLNGDLSVTRALGDWKLKYPVGTASPLIADPDIQVVTLTEEDEFLIIGCDGIWDVMSSQEAVSFVRRGLRRHDDPQQCAKELVKEALRLNTTDNLTVIVVCLSTVEKIVESIPPHRRRFRACSLSEEARSRLKSLLEGN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241964g00001 367 SMART PP2C_4 50 328 IPR001932 -
Stsc241964g00001 367 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169
Stsc241964g00001 367 Gene3D - 34 336 IPR036457 -
Stsc241964g00001 367 ProSiteProfiles PPM-type phosphatase domain profile. 60 330 IPR001932 -
Stsc241964g00001 367 SUPERFAMILY PP2C-like 54 331 IPR036457 -
Stsc241964g00001 367 PANTHER PROTEIN PHOSPHATASE 2C 53 328 IPR015655 GO:0004722|GO:0006470
Stsc241964g00001 367 SMART PP2C_SIG_2 75 330 IPR001932 -
Stsc241964g00001 367 Pfam Protein phosphatase 2C 68 322 IPR001932 -
Stsc241964g00001 367 CDD PP2Cc 59 330 IPR001932 -
Stsc241964g00001 367 FunFam Probable protein phosphatase 2C 22 43 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241964g00001 Stsc-Chr241964 4738 6855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241964g00001 1 366 PP2C-type Phosphatase Gene Family AT1G48040 57.623 1.20e-146 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241964g00001 K14803 - gmx:100798957 594.734