Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241963g00004 ATGGCTGCAAAATTTGAGGGTGGGGCTTACCTGTCTTCCTTTGTTGATGCTGTTTTGGAGAACCTGTCTTCAATACTTGAAGAAGACGACTCATCCTTCGAAAGGAACAACTTGCTTGCAAGGTTGGAGAAATGTCTGTATGATGTTAGACCTGTTCTTGATGATGCTGAGCTGAAGCAATTCACCGACAAGAAAGTCAACAAGTGGCTTGTTGATCTCCATGATACTCTCTACATCGCTGATGACTTGCTTGATGAACTCTCCACCAAAGCTGGCATCGATGCCACTCAAAAGGGTCCAGGTAACTCTTCTTCCTGGTCTCGTCTTGTTGACTCATATATTGAAGATACTGGTGACTTGGAAAGAATAGTTGCAAGACTAGACTCTGTTGTAGCACGCAAATATTATCTTCGTCTGAAGGAGGGTGCCAAGGTGGACATGTCATGGAGAATTCCATCCGCATCTCTCGTTGTAAGTTCTGACATATTTGGTCGGGACAAAGACAAGGAGGAGGTAATCAAATTGTTGTTAAATGATACTTATCACGCTGAATCTCCTGTTACGGTGATCCCAATTTGGGGTATGGGTGGAATAGGGAAAACTACTCTGGCTCAACTGGTTTACAGTGATGCTAAAGTAGTGGCAAAATTTGACACTAGAGCATGGGTGTGTGTTGCTGAAAATTTTGATCCTGTTGGCCTTACAAGGACTATTCTACAGAAAATAAGTCATGCTTCTTTTAACACGGATGATTTTGATTCACTTCAAACTCGTTTGAAAGAAGCGTTGACGGGAAAGACATTCTTAGTTGTTCTAGATGATCTCTGGCATGATCACAAAGATACATGGGAGCATATTCTAAAACATTTTCAGCACGGAAATCATGGAAGTAAAATTTTATTAACAACCCGTAGTGAAAAGGTTGCTTCTGTGGTCACAACTACTGAACTACATTATCAACTAAGTTTATTGTCTGGTGAAGATTGTTTGTTGGTGTTCTTAAAACAAGCACATCTTTCCATTGACTCTATCAGTCCAACTTTGGAAAAAGTCGGCAAAGATATTGTAAAGAAGTGTGATGGATTGCCCTTGGCAGCTCAAGGCCTCGGAGGCTTATTGCGTGGAAATTCTGATGCCAAGTCTTGGAATCTTATATTGAAGAGTGAGATCTGGGAATTTTTTTATGATATGATAAAAATTGTTCCAGCATTAAGAATCAGTTATTATTATCTACCTACATGTCTGAAAAGGTGCTTTGTTTATTGTGCCTTATTTTCCAAAGATTATGAATTTGATAAAGGTGAACTGGTCTTGTTATGGATGGCTGAGAATTTTTTACAACCAGTAGGAAAGAAGACTCCAGAAGAAGTTGGTGATGAGTATTTTGATGAATTAGTTGCGAGATCATTTTTTCAACCTGCAGATAGTACTAAGGAAAATATATTTATGCTGCATGATCTCATGCATGATTTGGCAATGATCTTTGCTGTAGAGTTCTATTCCAGGCTGAAGAGCATGAGAAAGCTGATGAGATAG 1536 0.3945 MAAKFEGGAYLSSFVDAVLENLSSILEEDDSSFERNNLLARLEKCLYDVRPVLDDAELKQFTDKKVNKWLVDLHDTLYIADDLLDELSTKAGIDATQKGPGNSSSWSRLVDSYIEDTGDLERIVARLDSVVARKYYLRLKEGAKVDMSWRIPSASLVVSSDIFGRDKDKEEVIKLLLNDTYHAESPVTVIPIWGMGGIGKTTLAQLVYSDAKVVAKFDTRAWVCVAENFDPVGLTRTILQKISHASFNTDDFDSLQTRLKEALTGKTFLVVLDDLWHDHKDTWEHILKHFQHGNHGSKILLTTRSEKVASVVTTTELHYQLSLLSGEDCLLVFLKQAHLSIDSISPTLEKVGKDIVKKCDGLPLAAQGLGGLLRGNSDAKSWNLILKSEIWEFFYDMIKIVPALRISYYYLPTCLKRCFVYCALFSKDYEFDKGELVLLWMAENFLQPVGKKTPEEVGDEYFDELVARSFFQPADSTKENIFMLHDLMHDLAMIFAVEFYSRLKSMRKLMR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241963g00004 511 FunFam Probable disease resistance protein At1g63360 408 494 - -
Stsc241963g00004 511 Gene3D - 407 493 IPR036388 -
Stsc241963g00004 511 PRINTS Disease resistance protein signature 189 204 - -
Stsc241963g00004 511 PRINTS Disease resistance protein signature 359 373 - -
Stsc241963g00004 511 PRINTS Disease resistance protein signature 262 276 - -
Stsc241963g00004 511 FunFam Probable disease resistance protein At1g61300 148 316 - -
Stsc241963g00004 511 Gene3D - 15 137 - -
Stsc241963g00004 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 422 IPR027417 -
Stsc241963g00004 511 Gene3D - 324 406 IPR042197 -
Stsc241963g00004 511 Pfam NB-ARC domain 166 387 IPR002182 GO:0043531
Stsc241963g00004 511 Gene3D - 147 318 IPR027417 -
Stsc241963g00004 511 PANTHER DISEASE RESISTANCE PROTEIN RP 39 493 IPR044974 GO:0006952
Stsc241963g00004 511 Pfam Rx N-terminal domain 14 92 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241963g00004 Stsc-Chr241963 31127 32662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241963g00004 187 492 WRKY Transcription Factor Family AT5G45050 26.032 8.23e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241963g00004 - - aip:107626318 637.876