Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241961g00006 ATGGGAAACAACTGTGTTGGATCAAGAAAGTCTTCCAAAGATGATGCCACATATACAGGTTTCATGTCGTGGTGCCGGCCGAAGAAAGCGAAGGCAGACGCCGGTGACAAAGGCGAAGAAGATGTGAGCAAAACTGAAAATGAGACAGAAGCTGTTCGACAAAAGGCCCCAGAGGTTGTTAAAATTGAGAAAGAGGTGGTGAAGCCAACTCAACCCAAAGAGGTTCAAAATGATACTAAGCATTCAGAACCAAAAAAACAAGTTGAGGAGATTAAATTGCCAGCCCCAGCTCCTGCTCCGGCTCCGGCTCCGGCCCCAGCGCCTGCTCCAGCTCCGGCTCCAGCTCCTGCTCCTACTCCTGATCCAGCTCCAATTCCAACTCCTGTTCCAGCTCCAGTTCAAGCTCCAGCTCCAGCTCCAGCTCCAACAACAACAAATAACCAAGGGGAAGAAAAGGTTGAAGTAGGAGAGCCTGCAAAAGAAAAGAAGCCTGTCACTGTGAAGAGGCAAATAAGTGCAGGCCTCAGAAAAGGTTCTATCTTGCAAAGGAAAACTCCTGTCCTTAAGGACTTCTATACTGTGGGGTCGAAACTCGGACAAGGGCAATTTGGAACAACCTACCATTGTGTGGAGAAAGCTACTGGAACCAAGTATGCATGCAAGTCCATTTTGAAGAGGAAACTGGTGACTGATGAAGATGTTGAAGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCAGGCTGCCCCAATGTGATTTCCATTAAAGAAGCTTATGAGGATGCAGTCGCGGTTCATGTTGTGATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATAGGATTGTGGAAAGAGGGCATTACACAGAGAGAAAAGCAGCAAAACTAGCAAGGACTATAGTTGGTGTTATTGAGTCTTGCCATGCACTTGGAGTAATGCATCGCGACCTTAAGCCGGAGAACTTTCTTTTTGTTGATCAGCAGGAAGATGCACTCCTTAAAGCAATAGATTTTGGCCTCTCTACTTTCTTCAAACCAGGAGACATTTTTGATGATGTGGTAGGAAGCCCCTATTATGTTGCACCTGAAGTTCTCCGAAAGCATTATGGCCAAGAAGCTGATGTGTGGAGTGCTGGTGTCATCATATACATTCTCCTATGTGGTGTACCTCCATTTTGGGGAGAGAACGAGCAAGAGATTTTCGACTCAATTTTGAAGAGCAAACTGGATTTCTCATCAGCACCATGGCCTAGTATCTCTGAAGGTGCAAAAGACTTGGTTAGGAAGATGCTTGATAGAGATCCTAGCAAACGAATAACGGCATTCGAGGTTCTTCGACACCCCTGGATTCAGGTCGATGGAGCAGCTCCAGACAAGCCTCTTGATGCTGCAGTTTTGACTCGGCTGAAGCAATTTACGGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTAATTGCAGAGAATCTGAATGAAGATGAGATTGCTGGATTGAAAGAAATGTTTAAGAATATAGACACAGACAACAGTGGCCAAATTACTTTTGAAGAACTAAAGAATGGATTGAAAAAGTATGGTCATAATCTCAATGAGTCTGAAATTTATGACCTAATGCAAGCTGCAGATGTTGATAATAGCGGCACAATTGACTATCCAGAATTCTTAGCAGCAACATTGCACTTAAACAAAATTGAGAAGGAAGATCATTTAGCTGCAGCTTTCTCATTTTTTGACAAAGATGGTAGTGGCTATATCACTCAAGATGAGCTTCAACAAGCTTGTTTAGAATTTGGAATAGCGGATGTTCGCTTGGAGGATATGATCAGAGATGTTGACCAAGATAATAGTAAGTATAAGGAGCCCATGTTGTACAGAGCCCATAAGAACCAAAAGGGTGAAATCCTAATCCAACTTCCCTTCTCTCTCCCCACACCACTTTCACCCACGCCGCTGCCGCCGCCGCCACCTGCGCCTTCTCCTCCTCTCACGACCATGGCAGCTATCGACTACGAAGACGCACGCGGCGGCTCCTACGATGACCGCCGCCAAGCACTACCACAGCAGGACCTTGGCTACGACCCAAACTTCGTCCCGAATTCCGTCAAATCCTTTGTGGTCCACCTCTACTGCCATATCCACGAGAAGAACATCTACGAGATCCACGGATGTACGAAACCTCCTTACACACTCTCTCCGATCGCCTCTTCAAGGACTCTCCCTGGCCTGTCGACGCTGTCACTCACTACGTCGATAACGACCATGTCTTCTGCCGCTGCGCCTCTTCTTCTTCACACGGATTGA 2301 0.4641 MGNNCVGSRKSSKDDATYTGFMSWCRPKKAKADAGDKGEEDVSKTENETEAVRQKAPEVVKIEKEVVKPTQPKEVQNDTKHSEPKKQVEEIKLPAPAPAPAPAPAPAPAPAPAPAPAPTPDPAPIPTPVPAPVQAPAPAPAPTTTNNQGEEKVEVGEPAKEKKPVTVKRQISAGLRKGSILQRKTPVLKDFYTVGSKLGQGQFGTTYHCVEKATGTKYACKSILKRKLVTDEDVEDVRREIQIMHHLAGCPNVISIKEAYEDAVAVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIESCHALGVMHRDLKPENFLFVDQQEDALLKAIDFGLSTFFKPGDIFDDVVGSPYYVAPEVLRKHYGQEADVWSAGVIIYILLCGVPPFWGENEQEIFDSILKSKLDFSSAPWPSISEGAKDLVRKMLDRDPSKRITAFEVLRHPWIQVDGAAPDKPLDAAVLTRLKQFTAMNKLKKMALRVIAENLNEDEIAGLKEMFKNIDTDNSGQITFEELKNGLKKYGHNLNESEIYDLMQAADVDNSGTIDYPEFLAATLHLNKIEKEDHLAAAFSFFDKDGSGYITQDELQQACLEFGIADVRLEDMIRDVDQDNSKYKEPMLYRAHKNQKGEILIQLPFSLPTPLSPTPLPPPPPAPSPPLTTMAAIDYEDARGGSYDDRRQALPQQDLGYDPNFVPNSVKSFVVHLYCHIHEKNIYEIHGCTKPPYTLSPIASSRTLPGLSTLSLTTSITTMSSAAAPLLLHTD 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241961g00006 766 ProSitePatterns EF-hand calcium-binding domain. 578 590 IPR018247 -
Stsc241961g00006 766 ProSitePatterns Protein kinases ATP-binding region signature. 198 225 IPR017441 GO:0005524
Stsc241961g00006 766 SUPERFAMILY EF-hand 479 617 IPR011992 -
Stsc241961g00006 766 SMART efh_1 569 597 IPR002048 GO:0005509
Stsc241961g00006 766 SMART efh_1 497 525 IPR002048 GO:0005509
Stsc241961g00006 766 SMART efh_1 533 561 IPR002048 GO:0005509
Stsc241961g00006 766 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241961g00006 766 Gene3D Transferase(Phosphotransferase) domain 1 278 456 - -
Stsc241961g00006 766 FunFam Calcium-dependent protein kinase SK5 278 462 - -
Stsc241961g00006 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Stsc241961g00006 766 SMART serkin_6 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241961g00006 766 ProSitePatterns EF-hand calcium-binding domain. 542 554 IPR018247 -
Stsc241961g00006 766 MobiDBLite consensus disorder prediction 95 139 - -
Stsc241961g00006 766 FunFam Calcium-dependent protein kinase 1 194 277 - -
Stsc241961g00006 766 Gene3D - 476 616 - -
Stsc241961g00006 766 Pfam EF-hand domain 571 594 IPR002048 GO:0005509
Stsc241961g00006 766 Pfam Protein kinase domain 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241961g00006 766 MobiDBLite consensus disorder prediction 29 90 - -
Stsc241961g00006 766 Pfam EF-hand domain pair 498 558 IPR002048 GO:0005509
Stsc241961g00006 766 Gene3D - 466 559 - -
Stsc241961g00006 766 CDD STKc_CAMK 191 449 - -
Stsc241961g00006 766 MobiDBLite consensus disorder prediction 153 167 - -
Stsc241961g00006 766 MobiDBLite consensus disorder prediction 1 167 - -
Stsc241961g00006 766 Gene3D Phosphorylase Kinase; domain 1 194 277 - -
Stsc241961g00006 766 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Stsc241961g00006 766 SUPERFAMILY Protein kinase-like (PK-like) 190 667 IPR011009 -
Stsc241961g00006 766 PANTHER SERINE/THREONINE-PROTEIN KINASE 179 618 - -
Stsc241961g00006 766 ProSiteProfiles EF-hand calcium-binding domain profile. 565 600 IPR002048 GO:0005509
Stsc241961g00006 766 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241961g00006 766 ProSiteProfiles EF-hand calcium-binding domain profile. 493 528 IPR002048 GO:0005509
Stsc241961g00006 766 FunFam Calcium-dependent protein kinase 1 458 624 - -
Stsc241961g00006 766 ProSiteProfiles EF-hand calcium-binding domain profile. 529 564 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241961g00006 Stsc-Chr241961 30264 35671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241961g00006 1 614 EF-hand Containing Proteins AT3G10660 62.041 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc241961g00006 Pkinase 2.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241961g00006 K13412 - gmx:100800415 779.63