Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241960g00007 ATGGGGGATAGCAACATCAACCTTCCACCGGGGTTTCGGTTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCACAGAAAGGCAGCCCTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACCCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGCTATTGGAATCCAATGGGAATGGAGGAGCCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAGTTTTATGTGTTCTATGTTGGAGAAGCCCCTGATGGTAACAGAACCAATTGGATCATGCAAGAATATCGTCTATCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGATATGTCGAGTTTATGAAAATGACGAAAATGATGATGATGATGGTAATGGTGATGGAACAGAACTTTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTTAGCTTGCCAAATTAG 588 0.4235 MGDSNINLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPFDPWELDGRALAEGNQWYYYSRRTQNRVTANGYWNPMGMEEPVVSNSSNRRVGIKKFYVFYVGEAPDGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVICRVYENDENDDDDGNGDGTELSCLDEVFLSLDDLDEVSLPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241960g00007 195 PANTHER NAC TRANSCRIPTION FACTOR 56 8 166 - -
Stsc241960g00007 195 FunFam NAC domain-containing protein 104 17 163 - -
Stsc241960g00007 195 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Stsc241960g00007 195 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Stsc241960g00007 195 ProSiteProfiles NAC domain profile. 8 160 IPR003441 GO:0003677|GO:0006355
Stsc241960g00007 195 SUPERFAMILY NAC domain 6 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241960g00007 Stsc-Chr241960 44616 45566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241960g00007 1 163 NAC Transcription Factor Family AT1G61110 43.333 4.50e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241960g00007 NAM 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241960g00007 - - gmx:100788893 331.257