Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241958g00004 ATGAGCATGTTAGGGCTGAGAGACTTGGTTTTCATAACTCCAAACCCTTCTTCTCTTCACCAACATCGCCAACAACACCAACCGATTTCAACAGAAAACGGTTATTCAACAATCAGCAACAGCAACAACCCTCTGAGCGTTGGTTTCGGGATTTTTCCACTGTTAGCAGCCACACCGTGCGTTCAGGTACACAATAATAATAACCAGAGCAGCAATGAGGCGGCCATGGAAGAAGATTCTGGAAACAACAAGAACTGTGAGAGCGATGAAAATGGCGGTGAATTTAGGGTTTGTACGGACTGCGGGAACAGAGCCAAAAAAGATTGCGTGTACAGGCGGTGCAGGAGTTGCTGCAAAGGGCGCGGGTATGACTGTAGCACTCACGTGAAGAGCACGTGGGTCCCTGCTGTAAGACGCCGCGAGCGCCACGTGGAGTGTTCTGGAGGAGGAGGAGCTCTTAAGAAGATGAAGAACAATAGCAATGGATGTGGAAGTGCTGCCTCTCACTCTCATACTTCCACCTCTAATACCTGCTACTCTCAACAAGATGCAAGATTCAAAGAATCATTACCAGGTCATGTTCGTGCACCTGCAGTGTTCAGATGCCATAGGGTCTCAGCTGTTGGAAACGGTGAAAACGAATTTGCGTATTTAGCAACGGTTCATATAAGTGGCCATGTATTCAGGGGATTTCTGTATGACCATGGTGTTGAAGTTGAACCCAAAAATACCATAATGCCCTGTGCTTCAGAACTTCAACTTGGAAACAACTCCATTAGTGGTGGGAAGAACAAGGAATGTTCTTCTGCAATTGGAGTTGATAATGTCTATTCTGCTTCTGCTTCAACATTGCTTTAA 858 0.4615 MSMLGLRDLVFITPNPSSLHQHRQQHQPISTENGYSTISNSNNPLSVGFGIFPLLAATPCVQVHNNNNQSSNEAAMEEDSGNNKNCESDENGGEFRVCTDCGNRAKKDCVYRRCRSCCKGRGYDCSTHVKSTWVPAVRRRERHVECSGGGGALKKMKNNSNGCGSAASHSHTSTSNTCYSQQDARFKESLPGHVRAPAVFRCHRVSAVGNGENEFAYLATVHISGHVFRGFLYDHGVEVEPKNTIMPCASELQLGNNSISGGKNKECSSAIGVDNVYSASASTLL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241958g00004 285 NCBIfam LRP1 C-terminal domain 190 237 IPR006511 -
Stsc241958g00004 285 NCBIfam putative zinc finger domain, LRP1 type 97 139 IPR006510 -
Stsc241958g00004 285 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 270 IPR007818 GO:0003700|GO:0006355
Stsc241958g00004 285 Pfam Domain of unknown function (DUF702) 97 238 - -
Stsc241958g00004 285 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241958g00004 Stsc-Chr241958 15666 17651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241958g00004 1 258 C2H2 Transcription Factor Family AT5G12330 38.206 2.40e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc241958g00004 DUF702 2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241958g00004 - - ahf:112784666 421.779