Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241952g00004 ATGGAAATGGACCCTGGCAGTGGCAAGCTTTTCATTGGCGGGATTTCATGGGACACAAATGAAGACCGGCTCAGACAATATTTCCAGCGCTTTGGTGATGTTGTTGAAGCAGTGATCATGAAGGATCGGACTACTGGACGGGCCCGTGGATTCGGCTTTGTTGTTTTTGCTGATGCTTCTGTTGCTGAGCTAGTTGTTATGGAGAAACATGTCATTGATGGCAGAACTGTTGAAGCAAAAAAGGCTGTCCCCAGAGATGACCAGAATGTTCTGAACAAAAGCAACAGCAGTAGTCACAGTTCACCTGGTCCTACTCCATCCCGTACAAAGAAGATATTTGTCGGAGGTCTAGCATCAACGGTTACCGAGAGCGACTTCAAGAAGTACTTTGATCAATTCGGAACAATTACAGATGTGGTTGTGATGTATGATCATAACACCCAAAGGCCTAGAGGTTTTGGATTCATCACCTATGATTCGGAGGAAGCAGTTGACAAAGTTCTATACAAATCTTTCCATGAGTTGAATGGTAAATTGGTTGAGGTTAAGAGGGCTGGATTTAATGCAGGTGTAGTTGGAAGGAATGGACTTAAAATAGATGGAAGATCAAATGCTGTTACTGTTGGCCATAGTGAATATCCTCTTTTCGGTCATAGTTATGGGACGGGACTCAACTTTGAGCCACCATTGACCCAAAATGGAACTTCAAACTTTACTTCTTCCTTCATAGGGCGAACACTGAACTCTTCATTCAGTGGTAGTCCAAGCAGGTACAGCAATGCCATGGGTTATGCTGGTGCAAATGTAGGCAATAATTCAGCCATGAGTTCTACAAGTCAGAACTTGTGGGGAAATGGGAACCTTAACTATGCTGCTAACATTGCAAATTCCGATGCTCTTGCTGGTTATCGGAATGAAAATTCAAGCATGGCTTCTTATGGTAGTATAGGATCACTTTGGAGTTCCTCCCTCGGTACAGATCAGACTGGAATTATCGGCTCCGGATATGGTAAGGGCAGTCTAAGTAGCTCTGGAGATGTGAATTTAGGGTCGAAAACAGTAGGTTATGGAAAAAATAGTGATAACATTGTTACATCAAGTTCTTCATATTCCTTACCAAATTTAAGTTATGATGAGGCATACAATGCTTCTTATGATGCTGGGTCATTTTATGGGGACCGTATGTGGAGTACATTGCCTTCAGAATTAGAGGATTCCAGCTCTCTTGGTTTTGGCATTGACCATGCTGTTTCAGGCTTAATGCGCAAAGGCTCTGGCAGCCACATTGGAGCTTATGCTGTTGCCAACACTCAACCAAATAGAGGAATTGTTGCCTAG 1338 0.432 MEMDPGSGKLFIGGISWDTNEDRLRQYFQRFGDVVEAVIMKDRTTGRARGFGFVVFADASVAELVVMEKHVIDGRTVEAKKAVPRDDQNVLNKSNSSSHSSPGPTPSRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKSFHELNGKLVEVKRAGFNAGVVGRNGLKIDGRSNAVTVGHSEYPLFGHSYGTGLNFEPPLTQNGTSNFTSSFIGRTLNSSFSGSPSRYSNAMGYAGANVGNNSAMSSTSQNLWGNGNLNYAANIANSDALAGYRNENSSMASYGSIGSLWSSSLGTDQTGIIGSGYGKGSLSSSGDVNLGSKTVGYGKNSDNIVTSSSSYSLPNLSYDEAYNASYDAGSFYGDRMWSTLPSELEDSSSLGFGIDHAVSGLMRKGSGSHIGAYAVANTQPNRGIVA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241952g00004 445 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 440 - -
Stsc241952g00004 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Stsc241952g00004 445 FunFam Heterogeneous nuclear ribonucleoprotein 1 107 189 - -
Stsc241952g00004 445 CDD RRM2_Hrp1p 111 185 - -
Stsc241952g00004 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 178 IPR000504 GO:0003723
Stsc241952g00004 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
Stsc241952g00004 445 MobiDBLite consensus disorder prediction 83 110 - -
Stsc241952g00004 445 FunFam Heterogeneous nuclear ribonucleoprotein 1 7 89 - -
Stsc241952g00004 445 SMART rrm1_1 111 183 IPR000504 GO:0003723
Stsc241952g00004 445 SMART rrm1_1 9 80 IPR000504 GO:0003723
Stsc241952g00004 445 CDD RRM1_hnRNPA_hnRNPD_like 10 80 - -
Stsc241952g00004 445 Gene3D - 89 203 IPR012677 -
Stsc241952g00004 445 Gene3D - 7 88 IPR012677 -
Stsc241952g00004 445 SUPERFAMILY RNA-binding domain, RBD 4 96 IPR035979 GO:0003676
Stsc241952g00004 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 84 IPR000504 GO:0003723
Stsc241952g00004 445 SUPERFAMILY RNA-binding domain, RBD 93 189 IPR035979 GO:0003676
Stsc241952g00004 445 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241952g00004 Stsc-Chr241952 24720 27955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241952g00004 5 180 Eukaryotic Initiation Factors Gene Family AT2G36660 21.348 3.73e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241952g00004 K14411 - qsa:O6P43_031333 523.472