Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241948g00007 ATGGAAACACTACTACTTAGCAATAGGAAATCGTACTTCTCTTCTACTCCTCCAAGTCCATGTACTCCATTGCAGAATCCACAAGAGAACAAGAATCAACAATCTTTGGAAGATGAAGAGGTAGAAGAAAAGGAAAGAAAGATGGATCATAATAATAATAATAACAATAATGCTTTGTTATCGTTGGATCTGAATGTCTCAGGCGGCAACATCAACGACGACGATTTAGACGATGGATTCCGGGAGCTCAACCTCATAACTAGTTTGGATATGGGTTGGTCGAAAAACAAAACTGATAATAACAATAATTCTTCATCAGAAGAAAAAGAACCGTCACAATTTGGTGGTGGTTCATCTTCTTCTGATATAGAACCAAGAATTTTCTCATGCAATTATTGCCAGAGAAAATTCTACAGCTCGCAAGCACTCGGAGGACACCAAAACGCTCACAAGAGAGAGCGATCGATAGCGAAGAGAGGCCATAGATTCGGAACACAAATAGTGTCCTCTGCAGCAGCCTTTGGAATGATTCCTCTTCGCTATGCGTCCTCTACTGCCAGCATCGCGTCTCTGCCACTCCACGGTAGCAGAGGCGCGTGTGGCAGCAGAGGACTCGGAATCCAAGCTCATGCAATGGTTCATAAACCTTCAAATCTTGTTCATTCCAGCGGACACCATCACGGTTGGTCAAGACCGTTAATTGATCAACAACCCGGGGTGGCGAAACTAGCTGTGGCGGATTTTCATCGAACAACCTCGCCATTAACGGCGTCAAGAGGAAGCGTTGGAAGATTTGAGGTGAATACTTTAATGAATTCAGCATCAGCAAGTAAAGAAATCAGTGAGTTTCTTCTTAGTAATAATGGAAATCATCATCATCATCATCATCAAGATGAAATGAAGCACCTTGATTTGTCTCTCAAGCTTTAG 930 0.4247 METLLLSNRKSYFSSTPPSPCTPLQNPQENKNQQSLEDEEVEEKERKMDHNNNNNNNALLSLDLNVSGGNINDDDLDDGFRELNLITSLDMGWSKNKTDNNNNSSSEEKEPSQFGGGSSSSDIEPRIFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIVSSAAAFGMIPLRYASSTASIASLPLHGSRGACGSRGLGIQAHAMVHKPSNLVHSSGHHHGWSRPLIDQQPGVAKLAVADFHRTTSPLTASRGSVGRFEVNTLMNSASASKEISEFLLSNNGNHHHHHHQDEMKHLDLSLKL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241948g00007 309 MobiDBLite consensus disorder prediction 92 121 - -
Stsc241948g00007 309 MobiDBLite consensus disorder prediction 288 309 - -
Stsc241948g00007 309 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Stsc241948g00007 309 Gene3D Classic Zinc Finger 96 173 - -
Stsc241948g00007 309 MobiDBLite consensus disorder prediction 1 59 - -
Stsc241948g00007 309 MobiDBLite consensus disorder prediction 287 309 - -
Stsc241948g00007 309 MobiDBLite consensus disorder prediction 1 32 - -
Stsc241948g00007 309 MobiDBLite consensus disorder prediction 33 51 - -
Stsc241948g00007 309 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 24 309 IPR044246 GO:0009788
Stsc241948g00007 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Stsc241948g00007 309 SUPERFAMILY beta-beta-alpha zinc fingers 125 155 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241948g00007 Stsc-Chr241948 42400 43329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241948g00007 60 309 C2H2 Transcription Factor Family AT5G10970 38.462 4.51e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241948g00007 - - gmx:100820461 254.988