Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241945g00001 ATGGCGGCAAGTCGCAAGCTTTATGGGGGTTCAAGCATGTCCCTTCTCCTCCAAAACGATACCAGGCTTCCTTCTTCCTCTCATCAAGTTCTTGATTCTCTTTGGCTTCACACCTCTGACCCTTCTTCTTTCCAAGGTTCAAAAAGCATGGTTGATTTTGAGAATGGTAGAGGAAGCAACAACATAAGAGACAGGAGCTTCTTCCAACAAGGGCTAATGGAAAAAGAAGAAAATAATAATAATAGTAACAACATGTGTGATGACGATTATGACCCTTCATGCTTCCACCAAACGGGTAACGGTAACAGCAAGAAACGGAGGCTAACGAGCGAGCAGGTTCAGTTCTTGGAAAGAAGCTTCGAGGTGGAGAACAAGCTTGAACCAGAAAGAAAAGTGCAGCTTGCTAAAGAGCTTGGTTTGCAGCCAAGGCAAGTGGCTATTTGGTTTCAGAACAGAAGGGCAAGGTTCAAGACGAAGCAGCTTGAGAAAGAGTATGGTGCATTGAAAGCTAGCTTTGACAAACTCAAAGGTGACTATGAAAGTCTTCTTCAACAGAATCACAAGTTGAAACAAGAGGTAAATTCTCTTAAAAATAAGTTGATTCCTAGAGATAAAAATGACGGAAATTATTCTTCGGATGAAAAATCATCTCCACATAATGTTGATATAATGAATTTAAACGACGAGAAGAAGGAAGAGGAGCCTATTATGATGGAACTGATGATCTCAAATTCAACATCTAATGAGAATGGGTCTAAGATGCCATTGACACACCCTATCATGCTAACATGCAAGCAAGAAGATGCAAATTCGGCCAAAAGCGATGTCCTCGATGATTCGGATAGTCCACATTGCACCTACGGAAATCATCACCATCACCACCACCGTCACCTCTCATCGTTCATGGAAGAGGAGCCGGCCGAATCCGACGAATTCTCGCAAGATGAGGATGATAACCTTAGCGAAAACCTTTTGACCCTTCCTTGTTTGCCTAAGGTTGAAGATAATGATGCATGCTACCATGAACAAAACGAGAACACTTGTGGCTTTGGTTTCCCAGTAGAAGACCAAACCTTTTGTTTCTGGCCTTACTAA 1095 0.4228 MAASRKLYGGSSMSLLLQNDTRLPSSSHQVLDSLWLHTSDPSSFQGSKSMVDFENGRGSNNIRDRSFFQQGLMEKEENNNNSNNMCDDDYDPSCFHQTGNGNSKKRRLTSEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGALKASFDKLKGDYESLLQQNHKLKQEVNSLKNKLIPRDKNDGNYSSDEKSSPHNVDIMNLNDEKKEEEPIMMELMISNSTSNENGSKMPLTHPIMLTCKQEDANSAKSDVLDDSDSPHCTYGNHHHHHHRHLSSFMEEEPAESDEFSQDEDDNLSENLLTLPCLPKVEDNDACYHEQNENTCGFGFPVEDQTFCFWPY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241945g00001 364 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Stsc241945g00001 364 CDD homeodomain 104 160 IPR001356 GO:0003677
Stsc241945g00001 364 Pfam Homeodomain 104 157 IPR001356 GO:0003677
Stsc241945g00001 364 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 84 244 IPR045224 GO:0003700
Stsc241945g00001 364 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Stsc241945g00001 364 SMART HOX_1 102 163 IPR001356 GO:0003677
Stsc241945g00001 364 PRINTS Lambda-repressor HTH signature 139 155 IPR000047 GO:0003677
Stsc241945g00001 364 PRINTS Lambda-repressor HTH signature 130 139 IPR000047 GO:0003677
Stsc241945g00001 364 Gene3D - 97 166 - -
Stsc241945g00001 364 FunFam homeobox-leucine zipper protein ATHB-6-like 107 153 - -
Stsc241945g00001 364 SUPERFAMILY Homeodomain-like 87 161 IPR009057 -
Stsc241945g00001 364 MobiDBLite consensus disorder prediction 288 319 - -
Stsc241945g00001 364 Coils Coil 172 199 - -
Stsc241945g00001 364 MobiDBLite consensus disorder prediction 200 222 - -
Stsc241945g00001 364 Pfam Homeobox associated leucine zipper 159 200 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241945g00001 Stsc-Chr241945 8825 11035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241945g00001 104 299 Homeobox Transcription Factor Family AT3G01470 40.580 1.74e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc241945g00001 Homeodomain 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241945g00001 - K09338 adu:107489132 619.387