Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241941g00007 ATGGGAAGGGCACCTTGCTGTGAGAAAGTGGGGTTGAAGAAGGGAAGGTGGACAGAAGAGGAAGATGAATTATTAACAAAGTATATTCAAGCCAATGGTGAAGGTTCATGGAGGTCATTGCCCAAAAATGCAGATGGCCTTAAGAGAGGGAACATTTCTGCTGAAGAGGAAGATCTCATTGTCAAGTTGCATTCATCTTTTGGCAACAGGTGGTCTTTGATAGCGAGTCATTTGCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAACTCTCACCTGAGTCGCAAGATCTACAGCTTTCGGAGAGCAACTAACCTAGACACCACCCAAATAGGCCTCACCGATACACCCAATAATAATGTTCATCACATTTATCCAAAGCCTAAAGCCGGTAGAACAAGCCGTTGGGCCATGAAGAAGAACAAAACCTACATTCACACTAACAAATCCAATAATAATAATAACCAAAACGAAAAAGACGAAATTGCCCTTCCTCAAGTTAGCCACAAAGAAAAAGATGACGTTGTTCCAACTCCACCAACACCTTCTCTTGAGAGTGAGGGTTTTTGCAACAAAATTGAGGATCTCATGGTCTTGGATTTGGACTCTAATGACAACAACAATAATAATAACAATGGTGTGGAAAAAGAAAAAGAAAAAGGGGAAGTACAGTGGCCTACGACGACGCATGAGAAAGAAAACAGTGACACGTTGTTTGGGCCATATGATGAACAAGTTGAAGACATTACTGTTACTAGTAATATTAATATTAATGGCGGTGGGGCGTTGAGCCTTGATGACATGATGGGCAATTTCATGTTGGACGAAATAATATGTGGGGTTCACAACATTAATGAAGATATTGAAATCAATAATGGTGACTATGTGCGTGAGGAGACTGAAATTAACAATAAGATTGTTAGTGATCAAGAGTTGAATTTAGGGTTAGATGAATATTTGAATTGGGAGAGTGCCATGGAGTTCGTCACTAATAATAATAATGATAATAATAATAATAATAGTAATAGTGAGTCATCAGAGGGTTGTTATTTGGAACAAAAAGAAAATTTGCTGACGTGGCTGTGGAAAGATGATGATTGGGAAAGTGAATGCATGAAGATGGGAGAGAGCTTGGATATAGAGAAGCAAAATAATGATGATGATGTTGTTGCTTGGTTTCTCTCTTGA 1191 0.3896 MGRAPCCEKVGLKKGRWTEEEDELLTKYIQANGEGSWRSLPKNADGLKRGNISAEEEDLIVKLHSSFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFRRATNLDTTQIGLTDTPNNNVHHIYPKPKAGRTSRWAMKKNKTYIHTNKSNNNNNQNEKDEIALPQVSHKEKDDVVPTPPTPSLESEGFCNKIEDLMVLDLDSNDNNNNNNNGVEKEKEKGEVQWPTTTHEKENSDTLFGPYDEQVEDITVTSNININGGGALSLDDMMGNFMLDEIICGVHNINEDIEINNGDYVREETEINNKIVSDQELNLGLDEYLNWESAMEFVTNNNNDNNNNNSNSESSEGCYLEQKENLLTWLWKDDDWESECMKMGESLDIEKQNNDDDVVAWFLS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241941g00007 396 SMART sant 13 45 IPR001005 -
Stsc241941g00007 396 SMART sant 48 96 IPR001005 -
Stsc241941g00007 396 Gene3D - 53 98 - -
Stsc241941g00007 396 SUPERFAMILY Homeodomain-like 11 90 IPR009057 -
Stsc241941g00007 396 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Stsc241941g00007 396 ProSiteProfiles Myb-like domain profile. 9 94 IPR001005 -
Stsc241941g00007 396 MobiDBLite consensus disorder prediction 165 188 - -
Stsc241941g00007 396 CDD SANT 53 94 IPR001005 -
Stsc241941g00007 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 98 IPR017930 -
Stsc241941g00007 396 Pfam Myb-like DNA-binding domain 49 94 IPR001005 -
Stsc241941g00007 396 Gene3D - 11 47 - -
Stsc241941g00007 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 43 IPR017930 -
Stsc241941g00007 396 MobiDBLite consensus disorder prediction 213 230 - -
Stsc241941g00007 396 FunFam Myb transcription factor 53 98 - -
Stsc241941g00007 396 MobiDBLite consensus disorder prediction 202 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241941g00007 Stsc-Chr241941 43580 48564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241941g00007 1 161 MYB Transcription Factor Family AT5G49330 53.476 9.92e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241941g00007 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241941g00007 K09422 - gmx:100814275 300.441