Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241941g00005 ATGGGAAGGACTCCTTGTTGTGAGAAGGTGGGGTTGAAGAAGGGAAAGTGGACAGAAGAGGAGGATGAACTATTAACAAAGTATATTCAAGCCAATGGTGAAGGTTCATGGAAGTCATTGCCCAAAAATGCAGGATTATTAAGATGTGGGAAGAGTTGTAGGCTGAGATGGGTCAACTATTTGAAAGGTGGCATAAAAAGAGGGAACTTTTCAACTGAAGAGGAAGATACCATCGTCAACTTGCATGCATCTTTTGGCAACAGGTGGGCTACAATAGCGAGTCATTTGCCAGGAAGAACAGATAACGAAATTAAAAACTATTGGAACTCTAACCTCAGCAGAAAACTCTATTGCTTCTCCACAGTAACTACTACTACCATACACACCACCCTCCCAGGGTTCACCCATATTCCTCCTCCAAACCCAAAACGACGTCGTTGGTCCATCATCAACAATAACAAATTCTACCCACAAAATAAGGTTGACAAAATCCCTAAACAAACAGCACCTCAAAAGAACAGAGATGATGATTCTCTTGTTCATGTACCTTCAACTCCTTCTATAGATATGGAAGCTTTGTTCAACCCCATAGAGGATTTCATGGAGCTTAACACAACCACGATGTTGAGAGCACTAGATGAAGAAGTTGGTGGTGATTGGGCATTGAATTTTGAGGACATGAAAGAGAGTAATTTCATGGTGATGGATCTATGTGATGAGGTTGAAAAATTAAATGAAGAAAGCATGGCTAATATCGTTACTAATTATAGTAATAATAAATTGGGTGTGGACCAAGTTACAGAGGGTAGTAATAATCATGAGTGGGAGTGGGAGTGGGAGAAGGAGTTTAATAATAATAATAATGGATCTGAGAATAAGAAGGAGAACTTGCTGACATGGCTGTGGGAAGATGATTGGGAAAGCGATTGCATCAAATTGGAAGAGACCATGGGTCCCCATAAACAAATCGATGATATTGTTTCTTGGTTACTCTTGTGA 999 0.4014 MGRTPCCEKVGLKKGKWTEEEDELLTKYIQANGEGSWKSLPKNAGLLRCGKSCRLRWVNYLKGGIKRGNFSTEEEDTIVNLHASFGNRWATIASHLPGRTDNEIKNYWNSNLSRKLYCFSTVTTTTIHTTLPGFTHIPPPNPKRRRWSIINNNKFYPQNKVDKIPKQTAPQKNRDDDSLVHVPSTPSIDMEALFNPIEDFMELNTTTMLRALDEEVGGDWALNFEDMKESNFMVMDLCDEVEKLNEESMANIVTNYSNNKLGVDQVTEGSNNHEWEWEWEKEFNNNNNGSENKKENLLTWLWEDDWESDCIKLEETMGPHKQIDDIVSWLLL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241941g00005 332 CDD SANT 69 112 IPR001005 -
Stsc241941g00005 332 CDD SANT 16 61 IPR001005 -
Stsc241941g00005 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc241941g00005 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc241941g00005 332 FunFam Myb transcription factor 11 67 - -
Stsc241941g00005 332 Gene3D - 69 116 - -
Stsc241941g00005 332 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Stsc241941g00005 332 SMART sant 13 63 IPR001005 -
Stsc241941g00005 332 SMART sant 66 114 IPR001005 -
Stsc241941g00005 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc241941g00005 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc241941g00005 332 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc241941g00005 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc241941g00005 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc241941g00005 332 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241941g00005 Stsc-Chr241941 18679 22609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241941g00005 1 123 MYB Transcription Factor Family AT5G49330 73.171 1.69e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241941g00005 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241941g00005 K09422 - gmx:100814275 265.388