Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241941g00003 ATGGCGCATCCAACACCCAAGCTTTTCCTCCTCCTTCTTCTATGCGCTATTTGCTATTATCCTCTCAACGCCATCGCCGGAAAGAGCTATTACGACATACTTCAAGTCTCCAAGGGTGCGAGCGATGATCAGATAAAGAGGGCGTATAGGAAGCTTGCCTTGAAGTACCATCCTGATAAGAACCAGGGCAACGAGGAAGCCAATAAGCGATTTGCCGAAATTAACAATGCATATGAAGTCCTGTCGGACAGCGAAAAGAGAAGCATCTATGACAGGTATGGCGAGGAGGGTTTGAAACAGCACGCTGCTGGTGGAGGCAGAGGTGGCGCTGGAATGGGAATGAACTTCCAAGACATCTTCAGCAGTTTCTTTGGTGGTGGTTCAATGGAAGAGGAGGAAGAGAGGGTTGCAAAAGGTGATGATGTGATTGTTGAATTGGATGCATCCCTGGAAGATTTGTACATGGGAGGTTCCCTTAAGGTTTGGAGGGAGAAGAATGTTATAAAGCCAGCACCTGGGAAGAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATTGGCCCTGGGATGTTCCAACAGATGACAGAGCAGGTCTGTGACCAATGTGCAAATGTTAAGTTTGAAAGAGAAGGTTATTTTATCACTGTTGATATTGAGAAAGGCATGCAGGATGGGCAGGAGGTACTTTTTTACGAGGATGGTGAGCCCATAGTTGATGGAGAACCTGGAGATCTAAGGTTTCGAATCAGAACAGCACCACATGACATTTTCAGAAGGGAAGGCAATGACTTGCACACAACAGTCACTATAACACTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACTATTAAACACCTAGATGAGCATCTAGTGGACATAAGCACCAAGGGAATCACAAAGCCAAAGGAAGTGAGGAAGTTCAAAGGAGAGGGAATGCCATTACATGTGAGCACAAAGAAAGGAAATCTCTATGTCACATTTGAGGTTCTTTTCCCCACATCATTAACAGAGGAGCAGAAAACAAACATAAAAGCAATTCTTGGTTAG 1053 0.4492 MAHPTPKLFLLLLLCAICYYPLNAIAGKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNQGNEEANKRFAEINNAYEVLSDSEKRSIYDRYGEEGLKQHAAGGGRGGAGMGMNFQDIFSSFFGGGSMEEEEERVAKGDDVIVELDASLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCDQCANVKFEREGYFITVDIEKGMQDGQEVLFYEDGEPIVDGEPGDLRFRIRTAPHDIFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISTKGITKPKEVRKFKGEGMPLHVSTKKGNLYVTFEVLFPTSLTEEQKTNIKAILG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241941g00003 350 FunFam DnaJ protein ERDJ3B 26 133 - -
Stsc241941g00003 350 PRINTS DnaJ domain signature 31 49 IPR001623 -
Stsc241941g00003 350 PRINTS DnaJ domain signature 86 105 IPR001623 -
Stsc241941g00003 350 PRINTS DnaJ domain signature 66 86 IPR001623 -
Stsc241941g00003 350 PRINTS DnaJ domain signature 49 64 IPR001623 -
Stsc241941g00003 350 SUPERFAMILY Chaperone J-domain 26 127 IPR036869 -
Stsc241941g00003 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 259 343 IPR008971 GO:0006457|GO:0051082
Stsc241941g00003 350 CDD DnaJ_C 140 337 - -
Stsc241941g00003 350 Coils Coil 64 84 - -
Stsc241941g00003 350 ProSiteProfiles dnaJ domain profile. 29 94 IPR001623 -
Stsc241941g00003 350 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 16 349 - -
Stsc241941g00003 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 137 262 IPR008971 GO:0006457|GO:0051082
Stsc241941g00003 350 Pfam DnaJ domain 30 91 IPR001623 -
Stsc241941g00003 350 SMART dnaj_3 28 86 IPR001623 -
Stsc241941g00003 350 FunFam DnaJ subfamily B member 11 255 350 - -
Stsc241941g00003 350 Gene3D DnaJ domain 26 133 IPR036869 -
Stsc241941g00003 350 Pfam DnaJ C terminal domain 144 334 IPR002939 -
Stsc241941g00003 350 CDD DnaJ 30 83 IPR001623 -
Stsc241941g00003 350 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Stsc241941g00003 350 Gene3D - 134 255 - -
Stsc241941g00003 350 Gene3D - 256 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241941g00003 Stsc-Chr241941 6177 11286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241941g00003 28 93 C2H2 Transcription Factor Family AT1G74250 42.254 5.67e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241941g00003 K09517 - pop:7491268 590.882