Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241937g00005 ATGGCGGCAGAAGTTATGGTCCTTGCTGATAAATCAACTGAAGATTTCATGGGGTCTAACTCTGAGGTTCATTTTTCTGGATTTCACATGGATTGCTTAGAGCAAAGAAAAGCCGGCATGGAGCAACCAACAACTTCAGAAGATGATATGTATAAACAACCTTTCGTTATAGGTGTTGCTGGAGGAGCAGCGTCTGGCAAGACCGCCGTTTGTGATATGATTATTCAGCAGCTTCATGATCAAAGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCAGTTGCTAAGTGTCATGGACAAGTTGAAGCGTGGTCAAGCGGTAAATATTCCAAAGTATGACTTTAAGGGTTACAAGAGCGGTGTATCTCCGGCAAGAAGGGTAAACCCCGCCGATGTTATAATTTTGGAAGGGATACTTATTTTCCATGATCCTCGTGTTCGTGCATTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGGCTCGCAAGAAGAATTAGGCGTGATACTGCCGAGAAGGCTCGCGATATTGCAACAGTTCTGGATCAGTATTCTAAATTTGTGAAGCCAGCTTTCGATGACTTTATCCTTCCAACAAAGAAGTATGCTGATATAATCATACCCCGAGGAGGAGATAATCATGTAGCCATTGATTTGATTGTACAGCATATTCGAACAAAACTCGGTCAACATGATCTGTGTAAAATATATCCTAATTTATACGTCATTCAGTCAACTTTTCAGATGCGGGGTATGCATACCCTCGTACGTGATTCTAAGACAACAAAGCATGATTTTGTATTCTATTCTGACCGTTTGATCCGTTTGGTTGTAGAACATGGACTAGGCCATCTGCCATTTACAGAGAAACAAGTAATCACTCCTACTGGGTCTGTATACAGTGGTGTGGATTTTTGTAAGAGGTTGTGCGGCGTTTCCATCATCAGGAGTGGGGAGAGTATGGAGAACGCCTTGCGCGCATGCTGCAAAGGTATCAAGATTGGGAAGATTCTTATTCATAGAGAAGGAGACAACGGTCAACAGCTAATATATGAGAAGTTGCCGAATGATATCTCAGATAGGCATGTGTTATTGTTGGATCCTATCTTAGGCACAGGTAATTCGGCTGTTCAAGCGATTTCTTTACTCTTAAGAAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTTATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTTCCAAGAATAAAAATCGTGACGTCTGAGATCGACATTGGTTTGAACGAAGATTTCCGCGTTATTCCTGGCATGGGAGAGTTTGGGGATAGGTATTTTGGAACAGATGATGATGACCTGCAAGTTGTGGCCCCTTCTTAA 1455 0.4137 MAAEVMVLADKSTEDFMGSNSEVHFSGFHMDCLEQRKAGMEQPTTSEDDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPEAFDTEQLLSVMDKLKRGQAVNIPKYDFKGYKSGVSPARRVNPADVIILEGILIFHDPRVRALMNMKIFVDTDADVRLARRIRRDTAEKARDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQMRGMHTLVRDSKTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDLQVVAPS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241937g00005 484 FunFam Uridine kinase 51 257 - -
Stsc241937g00005 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 247 IPR027417 -
Stsc241937g00005 484 CDD UMPK 56 254 IPR000764 -
Stsc241937g00005 484 Gene3D - 258 473 IPR029057 -
Stsc241937g00005 484 Pfam Phosphoribulokinase / Uridine kinase family 56 242 IPR006083 GO:0005524|GO:0016301
Stsc241937g00005 484 PRINTS Uridine kinase signature 84 95 - -
Stsc241937g00005 484 PRINTS Uridine kinase signature 200 211 - -
Stsc241937g00005 484 PRINTS Uridine kinase signature 222 235 - -
Stsc241937g00005 484 PRINTS Uridine kinase signature 186 196 - -
Stsc241937g00005 484 PRINTS Uridine kinase signature 54 71 - -
Stsc241937g00005 484 PRINTS Uridine kinase signature 129 144 - -
Stsc241937g00005 484 Pfam Uracil phosphoribosyltransferase 272 473 - -
Stsc241937g00005 484 CDD PRTases_typeI 331 446 IPR000836 -
Stsc241937g00005 484 FunFam Uridine kinase 258 473 - -
Stsc241937g00005 484 Gene3D - 50 257 IPR027417 -
Stsc241937g00005 484 NCBIfam uridine kinase 53 254 IPR000764 -
Stsc241937g00005 484 SUPERFAMILY PRTase-like 257 474 IPR029057 -
Stsc241937g00005 484 PANTHER URIDINE KINASE 46 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241937g00005 Stsc-Chr241937 43333 49298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241937g00005 8 476 PRT Gene Family AT4G26510 83.087 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241937g00005 K00876 - gmx:100798205 877.856