Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241936g00002 ATGGCGCTTGCATCTGATTTCGATGCAAAACTAGTTGATGATGATGAGCGCCTCAACCTGCCCCAAGCTGAGAAACACGAAGATGAACAAGATAGCTTCTTGTTTGCACAAATGACATGGTCAATTGTGGTTCCAATGGCTTTGAGGACCACAATTGAGCTCGGCGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCAAAAGATATTGTGGATCAAATTGGAACCAGCAACCCTGTAGGAGCATCAATGTTGGATCGTGTTCTTAGGCTTCTTGCATGTCATTCATTACTAACTTGTTGTTGTGTTGATGATCATAACATGGAGCAGAAGCTGTATTATAGCCTCTCACCAGTTTCCAAATATTTTGTGACTGATGCTGATGGTGTATCTTTGGGACCATCGATGTTTCTGCATCTAGATAAAGTCTTCTGCCAAAGCTGGAATGAATTGAAAGGAGCTATCCTTGAAGGAGGTATACCATTCCATAGGGCTCATGGCATGCATGTGTTTGAGTATGCAAAGATTGATGATAGGTTCAACAATGTTTTCAACAAAGCAATGCACAATTCCTCCACTATATTAATGAGGAGAGTTCTTGATGTCTACAAAGGTTTTGATAACATCAATAAACTAGTAGATGTTGGTGGTGGTGTTGGGGCGAATATCAAATTAATCACCTCCAAACACCCTCATATCCATGGCATCAATTTTGATTTGCCTCATGTCATAGATTGTGTCTCAGCCTATGATGGGGGGTCATTGCCCCTCACCCTAACACAAGGCTCCAACCCTGATGGTGTGGAGTATGTGGGAGGAGATATGTTTGAGAGTGTTCCTGATGGAGATGCCATTTTCATGAAGAGAATACTTCATGATTGGGGCGAAGAAGAATGCTTGAAGATATTGAGAAATTGCTTCAAGGCTATTCCCAATGATGGAAAGGTGATTGTGGTAGAAACAATTCTTCCCATTGTTCCTGAGCCAACATCTTTTGCCAAGAATGCTTTTAAATATGATATTGTCATGATGACTCAAATGCCTGGAGGGATTGAGAGAACCAAAAAAGATTTCATGGATTTAGCAAATGGATCTGGATTTAGTGGCATCAGATTTGTTTGTTGTATCTCTAGCTTTTGGGTTATGGAGTTCTACAAGTAG 1173 0.4109 MALASDFDAKLVDDDERLNLPQAEKHEDEQDSFLFAQMTWSIVVPMALRTTIELGVFDIIAKAGEGAKLSAKDIVDQIGTSNPVGASMLDRVLRLLACHSLLTCCCVDDHNMEQKLYYSLSPVSKYFVTDADGVSLGPSMFLHLDKVFCQSWNELKGAILEGGIPFHRAHGMHVFEYAKIDDRFNNVFNKAMHNSSTILMRRVLDVYKGFDNINKLVDVGGGVGANIKLITSKHPHIHGINFDLPHVIDCVSAYDGGSLPLTLTQGSNPDGVEYVGGDMFESVPDGDAIFMKRILHDWGEEECLKILRNCFKAIPNDGKVIVVETILPIVPEPTSFAKNAFKYDIVMMTQMPGGIERTKKDFMDLANGSGFSGIRFVCCISSFWVMEFYK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241936g00002 390 FunFam Caffeic acid O-methyltransferase 128 390 - -
Stsc241936g00002 390 PIRSF O-mtase 14 390 IPR016461 GO:0008168
Stsc241936g00002 390 Gene3D Vaccinia Virus protein VP39 128 390 IPR029063 -
Stsc241936g00002 390 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 36 390 IPR016461 GO:0008168
Stsc241936g00002 390 FunFam Caffeic acid 3-O-methyltransferase 15 127 - -
Stsc241936g00002 390 PANTHER O-METHYLTRANSFERASE 38 388 IPR016461 GO:0008168
Stsc241936g00002 390 SUPERFAMILY "Winged helix" DNA-binding domain 26 130 IPR036390 -
Stsc241936g00002 390 Pfam Dimerisation domain 46 97 IPR012967 GO:0046983
Stsc241936g00002 390 Pfam O-methyltransferase domain 152 372 IPR001077 GO:0008171
Stsc241936g00002 390 Gene3D - 14 127 IPR036388 -
Stsc241936g00002 390 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 388 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241936g00002 Stsc-Chr241936 35840 39578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241936g00002 28 378 Monolignol Biosynthesis Gene Families AT5G54160 47.009 4.76e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241936g00002 K13066 - gmx:100789402 449.514