Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241936g00001 ATGGCTCCTGCATTAGATTCCGATGCAAAGCTACTTGACCACCACCTCATGCTATCACCACAACTTGAGAATCAAGGACAAGAAGACGATGGCTTCTTGATTGCTCAAATGGCATGGTCAATTGTGGTTCCAATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGATAACGTCTTCTCCCAAAGCTGGAATGAATTGAAAGGAGCTATCCTTGAAGGAGGTATACCATTCAATAGGGCTCATGGCATGCATGTGTTTGAGTATGCAAAGATTGATGATAGGTTCAACAATGTTTTCAACAAAGCAATGCACAATTCCTCCACTATACTAATGAAGAAAATTCTTGATGTCTACAATGGCTTTGATAACATCAATAAACTAGTTGACGTTGGTGGCGGTGTTGGGGCGAATATCAAATTAATCACTTCCAAACACCCTCGTATCCATGGCATCAATTTTGATTTGCCTCATGTCATAGATTGTGTCTCACCCTATGATGGAGTGGAGTATGTGGGAGGAGATATGTTTGAGAGTGTTCCTGATGGAGATGCCATTTTCATGAAGAGAATACTTCATGATTGGGGCAACGAAGAATGCTTGAAGATATTGAGAAATTGCTTTAAGGCTATTCCCAATGATGGGAAGGTGATTGTGGTGGAAACAAGTCTTCCAATTGTTCCTGAGGCAACATCTTTAGCCAAGAATGCTTTTAAATATGATATTGTCATGATGACTCAAATGCCTGGAGGGATTGAGAGAACCAAACAAGATTTTATGGATTTAGCAAATGGATCTGGATTTAGTGGCATCAGATTTGTTTGTTGTGTCTCTAGCTTCTGGGTTATGGAGTTCTACAAGTAG 882 0.4036 MAPALDSDAKLLDHHLMLSPQLENQGQEDDGFLIAQMAWSIVVPMALKTTIELGVFDIIAKADNVFSQSWNELKGAILEGGIPFNRAHGMHVFEYAKIDDRFNNVFNKAMHNSSTILMKKILDVYNGFDNINKLVDVGGGVGANIKLITSKHPRIHGINFDLPHVIDCVSPYDGVEYVGGDMFESVPDGDAIFMKRILHDWGNEECLKILRNCFKAIPNDGKVIVVETSLPIVPEATSLAKNAFKYDIVMMTQMPGGIERTKQDFMDLANGSGFSGIRFVCCVSSFWVMEFYK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241936g00001 293 Gene3D Vaccinia Virus protein VP39 62 293 IPR029063 -
Stsc241936g00001 293 FunFam Caffeic acid O-methyltransferase 51 293 - -
Stsc241936g00001 293 PANTHER O-METHYLTRANSFERASE 65 291 IPR016461 GO:0008168
Stsc241936g00001 293 Pfam O-methyltransferase domain 70 275 IPR001077 GO:0008171
Stsc241936g00001 293 SUPERFAMILY "Winged helix" DNA-binding domain 28 73 IPR036390 -
Stsc241936g00001 293 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 293 IPR016461 GO:0008168
Stsc241936g00001 293 Gene3D - 40 61 IPR036388 -
Stsc241936g00001 293 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 292 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241936g00001 Stsc-Chr241936 30499 32837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241936g00001 63 293 Monolignol Biosynthesis Gene Families AT5G54160 53.680 5.92e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241936g00001 K13066 - gmx:100789402 335.88