Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241934g00008 ATGCGAATAAACACTGCACTTACCAACGCCGCCACTCTTCTCTTCAACAACTCTTCCCCTTTTACACCCTTCCTATTCCCGCGCCATTCATCTACCAATTTGTTCGTCGCAGGTTTGTCCTACGATACGAACGAAACCGTTCTAAGAGATGCATTTGGACAATACGGTCAAATAATCGAAGTTAAAGTAATATGCGATCGTGTCACTGGGAAATCAAAAGGCTATGGATTCGTTCGCTTTATTGCTGAAACTTCAGCTGCTACAGGTCGTAAAGAAATGCATAAAAAGATTCTAGATGGGAGACGCATTCGAGTGTGTTATGCACACAAACAAGCTAGCTAG 342 0.4298 MRINTALTNAATLLFNNSSPFTPFLFPRHSSTNLFVAGLSYDTNETVLRDAFGQYGQIIEVKVICDRVTGKSKGYGFVRFIAETSAATGRKEMHKKILDGRRIRVCYAHKQAS 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241934g00008 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Stsc241934g00008 113 Gene3D - 18 113 IPR012677 -
Stsc241934g00008 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Stsc241934g00008 113 SUPERFAMILY RNA-binding domain, RBD 17 111 IPR035979 GO:0003676
Stsc241934g00008 113 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 18 111 - -
Stsc241934g00008 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 111 - -
Stsc241934g00008 113 SMART rrm1_1 33 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241934g00008 Stsc-Chr241934 34669 35295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241934g00008 31 113 Eukaryotic Initiation Factors Gene Family AT4G34110 39.759 4.87e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241934g00008 K13195 - gmx:100306540 144.05