Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241934g00004 ATGAAGAGAGTGTTGATGGTAGAGGAGGGTAATGGTGGTGATTTAGATATGGTTAATTGCTTGATGTTACTAACAAAAGTTGGTGAAACCAAAAGCAATAGTCATCATCCATTGAAGGGTGGTGGCTTTAAGTGCAAGACATGTGATAGGAGATTTCAATCTTTTCAAGCACTTGGAGGACACAGAGCAAGTCATAAGAAGCTCAAGCAGATGATGGGTGCGGATCTTTCGTGTGAATTACCAACAAGTTCTTCATCATCATTGTCGTCGAACATGATGATGAAGAACAAGATGCACTCGTGCCCCATTTGTGGGCTCGAGTTTGCGATTGGACAAGCCCTCGGAGGACACATGAGAAAGCATAGAAATGTAATAAATAGTAATGGTGGTATGGTTATTCATGATGACGATGGTGGTGATCATGGTAGTAGTACTAGAGCTGAGAGGTTTAATTTGTGCTTAGACTTGAACCTCACGCCATATGAGAATGATCTCAAGCTTAACCTAAGGACTCCTATGTTGGATTGTTTTATTTGA 537 0.4097 MKRVLMVEEGNGGDLDMVNCLMLLTKVGETKSNSHHPLKGGGFKCKTCDRRFQSFQALGGHRASHKKLKQMMGADLSCELPTSSSSSLSSNMMMKNKMHSCPICGLEFAIGQALGGHMRKHRNVINSNGGMVIHDDDGGDHGSSTRAERFNLCLDLNLTPYENDLKLNLRTPMLDCFI 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241934g00004 178 Gene3D Classic Zinc Finger 40 121 - -
Stsc241934g00004 178 SUPERFAMILY beta-beta-alpha zinc fingers 43 121 IPR036236 -
Stsc241934g00004 178 SMART c2h2final6 43 65 IPR013087 -
Stsc241934g00004 178 SMART c2h2final6 99 121 IPR013087 -
Stsc241934g00004 178 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Stsc241934g00004 178 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Stsc241934g00004 178 PANTHER ZINC FINGER PROTEIN ZAT5 14 163 - -
Stsc241934g00004 178 Pfam C2H2-type zinc finger 99 122 - -
Stsc241934g00004 178 Pfam C2H2-type zinc finger 43 67 - -
Stsc241934g00004 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 121 IPR013087 -
Stsc241934g00004 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241934g00004 Stsc-Chr241934 19092 19717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241934g00004 16 169 C2H2 Transcription Factor Family AT2G28710 43.558 1.71e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241934g00004 zf-C2H2_6 1.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241934g00004 - - adu:107476874 218.009