Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241932g00011 ATGCGTTCTCCTCTTCTATCAGTGTTGGTGGTTCTGGCGCTACTCTCAGCCGCAGCACCACCGCGCATTCACTCCCTAAACCAAGACGGACTCTTCCTCTACGACATGAAGCTCTCCCTCGACGACCCTGACTCCACTCTCTCCAACTGGAACACCCGCCACTCCACCCCCTGCAACTGGTTCGGCGTCACCTGCGACTCACTCACCAACTCCACCGTCACCACCCTCGACCTCTCCTCCGCCAACCTCTTCGGCCCCTTCCCCTCCTCCTCCCTCTGCCGCCTCCGCAACCTCACCACCCTCATCCTCTTCAACAACTCCATCAACCACACTCTCCCTCAAGACATCTCCCTCTGCACCTCCCTCATCCACCTCGACCTCTCCCAGAACCTCCTCACCGGACCCCTCCCGGAATCTCTCTCCTTACTCCCCAACCTCCGCCACCTCGACCTCACCGGAAACAACTTCTCCGGCTCCATCCCTCCCTCATTCGGAAACTTCCAGAAACTCCAAGTCATAAGCCTCGTCTACAATCTTCTAGAAGGTTCCATTCCACCTTCCCTCGGCAACATCACCACCCTCAAGATGCTCAACCTCTCCTACAACCCCTTCTCACCAGCTCGAATCCCGCCGGAGCTCGGTAACCTCACGAACCTGGAAGTTCTTTGGCTCACTCAGTGCAACCTCGTCGGTGAAATACCGGAATCACTCGGTAACCTCAAGAGCCTCGTCGACTTGGACCTTGCATTCAATAACCTCTACGGTTCCATTCCGGGTTCACTCACTGAGTTAACTCGCTTGGTTCAGCTCGAGTTGTATAACAACTCGCTCTCCGGCGAGTTACCCAAGGGAATGTCGAACCTTACCTCCTTGAGGCTCGTTGATCTCTCCATGAACCACTTGGAAGGTGAGCTTTCCGATGAGTTATGCAGTTTGCCGCTCGAAAGTCTCAATCTTTATGAAAATCGCTTCGTCGGAGACTTGCCGGCGAGCATTGCTAACTCGCCGAACCTATATGAGTTAAGGTTGTTCGACAACAGGTTCACCGGAAAGTTGCCGGAGAATCTGGGGAAGAATGCGCCCTTGAGATGGATTGATCTCTCGACTAACCAATTCTCCGGTGACATTCCGGCGACTCTTTGCGATCATGGTGAGTTGGAGGAGCTTCTGTTGATATATAACTCGTTTTCCGGCAAACTTCCGGCGAGTCTTGGCGCATGCACGAGCTTAACGCGGATAAGACTCGGTTTCAACCGATTTTCCGGCGAGGTTCCGGCGGGTTTGTGGGGTCTTCCTCACGTGTCTCTGCTTGAGCTTGTTAACAACTCGTTTTCTGGTTCAATTGCGAGTACCATTGCCGGAGCCAGGAATCTTTCGCTGTTGAGGCTTTCGAAGAACGGTTTCCAGGGTCCAATCCCTCAAGAGATTGGATGGTTGGAAACTCTTCAGGAATTTTCTGGTGGTGATAACAAGTTCAATGGCTCATTGCCTCAGAGTTTTGTGAATCTTGGTCAGCTTGGTACCCTTGATCTGCATAACAATAAGCTCAGTGGAGAGCTTCCCACTGAGATCAAATCATGGAAGAAGCTGAACGAGTTAAATTTGGGTAACAATGAGATTGGTGGTGAGATCCCTAAAGAAATTGGTAGTTTGTCGGTGCTTAATTTTCTTGATCTTTCTAGTAACAAGTTTTCTGGGAAAGTACCCCTTAGTTTGCAGAATTTGAAGCTGAATGAGCTCAATTTGTCTTATAATCAGTTGAATGGAGAACTTCCCCCAATGTTGGCTAAGGATATGTACAAGGCTAGCTTTATTGGTAACCCTGGTTTGTGTGGGGATTTGAAGGGTTTGTGTGATGGAAGAAGAGGTAAGGATAAGAGTAGAAGCTTTGTTTGGTTGCTTAGAGCTATGTTCATTGTTGCTACTTTGGTGTTTGTTGTTGGTGTGGTATGGTTCTACTTCAAGTACAAGAGTTTCAAGAATGCAAGGTCTATTGATAAGTCAAAGTGGACACTTATGTCATTTCACAAGCTGGGTTTTGGTGAGGATGAGATCTTGAACTGCCTTGATGAAGATAATGTGATAGGAAGTGGATCTTCTGGGAAAGTCTACAAGGTTGTGCTTAGCAATGGTGAAGCTGTTGCTGTGAAGAAGATATGGGAAGGGGTTAATAAGAAGGGAATGGAATGTGGTGGAGATGTCGAAAATGGCCGCTTTCAAGACAATGCTTTTGATGCAGAGGTTGAGACACTGGGGAAAATTAGGCACAAGAACATTGTGAAGCTCTGGTGCTGCTGCACCACAAGGGATTGCAAGCTATTGGTTTATGAGTACATGCCGAATGGAAGCCTTGGTGATTTGCTGCATAGCAGCAAAGGAGGGTTGTTGGATTGGCCAACAAGGTACAAGATTGCGGTTGATGCAGCAGAAGGCCTCTCTTATCTGCATCATGATTGTGTTCCTCCAATTGTGCATAGAGACGTGAAATCTAACAACATCTTGCTTGATGGAGAGTTTGGCGCAAGGGTGGCCGATTTCGGAGTAGCTAAGGTAGTCGAAACCACCGGAAAAGGAACAAAATCGATGTCTGTCATAGCCGGATCTTGTGGATACATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGTGACATATATAGCTTTGGTGTTGTGATACTAGAGTTGGTTAGTGGAAGGAGGCCAGTAGACCCTGAATTTGGGGAAAAGGACTTGGTTTCATGGGTTTGCACAACCTTGGATCAAAAAGGCGTGGAGCATGTGGTTGACTCAAGGCTAGATTCTTGTTTCAAAGAAGAGATATGTAAGGTGCTCAACATTGGCCTTATGTGCACAAGCCCTCTCCCAATAAACCGGCCAGCAATGAGAAGAGTGGTGAAGATGTTGCAAGAGCTTGGCACCACCACCACCACAGATATCAGCAGAACAAAGTCAACTCAGAAAGACAGCAAGTTGCCCCCTTGTTACTATGATGATGGCTCTGATCATGGGAGTGTTGCTTAG 3030 0.4842 MRSPLLSVLVVLALLSAAAPPRIHSLNQDGLFLYDMKLSLDDPDSTLSNWNTRHSTPCNWFGVTCDSLTNSTVTTLDLSSANLFGPFPSSSLCRLRNLTTLILFNNSINHTLPQDISLCTSLIHLDLSQNLLTGPLPESLSLLPNLRHLDLTGNNFSGSIPPSFGNFQKLQVISLVYNLLEGSIPPSLGNITTLKMLNLSYNPFSPARIPPELGNLTNLEVLWLTQCNLVGEIPESLGNLKSLVDLDLAFNNLYGSIPGSLTELTRLVQLELYNNSLSGELPKGMSNLTSLRLVDLSMNHLEGELSDELCSLPLESLNLYENRFVGDLPASIANSPNLYELRLFDNRFTGKLPENLGKNAPLRWIDLSTNQFSGDIPATLCDHGELEELLLIYNSFSGKLPASLGACTSLTRIRLGFNRFSGEVPAGLWGLPHVSLLELVNNSFSGSIASTIAGARNLSLLRLSKNGFQGPIPQEIGWLETLQEFSGGDNKFNGSLPQSFVNLGQLGTLDLHNNKLSGELPTEIKSWKKLNELNLGNNEIGGEIPKEIGSLSVLNFLDLSSNKFSGKVPLSLQNLKLNELNLSYNQLNGELPPMLAKDMYKASFIGNPGLCGDLKGLCDGRRGKDKSRSFVWLLRAMFIVATLVFVVGVVWFYFKYKSFKNARSIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLSNGEAVAVKKIWEGVNKKGMECGGDVENGRFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGEFGARVADFGVAKVVETTGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVSGRRPVDPEFGEKDLVSWVCTTLDQKGVEHVVDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQELGTTTTTDISRTKSTQKDSKLPPCYYDDGSDHGSVA 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241932g00011 1009 SUPERFAMILY RNI-like 362 599 - -
Stsc241932g00011 1009 FunFam Receptor-like protein kinase HSL1 673 778 - -
Stsc241932g00011 1009 SMART serkin_6 689 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241932g00011 1009 MobiDBLite consensus disorder prediction 979 1009 - -
Stsc241932g00011 1009 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515
Stsc241932g00011 1009 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 779 989 - -
Stsc241932g00011 1009 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Stsc241932g00011 1009 ProSiteProfiles Protein kinase domain profile. 689 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241932g00011 1009 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Stsc241932g00011 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Stsc241932g00011 1009 Gene3D Ribonuclease Inhibitor 286 626 IPR032675 -
Stsc241932g00011 1009 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Stsc241932g00011 1009 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Stsc241932g00011 1009 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Stsc241932g00011 1009 SUPERFAMILY RNI-like 76 421 - -
Stsc241932g00011 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 385 972 - -
Stsc241932g00011 1009 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 26 191 - -
Stsc241932g00011 1009 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Stsc241932g00011 1009 SUPERFAMILY Protein kinase-like (PK-like) 685 971 IPR011009 -
Stsc241932g00011 1009 SMART LRR_typ_2 95 119 IPR003591 -
Stsc241932g00011 1009 SMART LRR_typ_2 264 287 IPR003591 -
Stsc241932g00011 1009 SMART LRR_typ_2 216 240 IPR003591 -
Stsc241932g00011 1009 SMART LRR_typ_2 288 312 IPR003591 -
Stsc241932g00011 1009 SMART LRR_typ_2 503 526 IPR003591 -
Stsc241932g00011 1009 SMART LRR_typ_2 143 166 IPR003591 -
Stsc241932g00011 1009 SMART LRR_typ_2 551 574 IPR003591 -
Stsc241932g00011 1009 FunFam Receptor-like protein kinase HSL1 313 620 - -
Stsc241932g00011 1009 Pfam Protein kinase domain 691 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241932g00011 1009 Gene3D Phosphorylase Kinase; domain 1 673 778 - -
Stsc241932g00011 1009 Gene3D Transferase(Phosphotransferase) domain 1 779 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241932g00011 Stsc-Chr241932 50754 54311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241932g00011 21 1009 Receptor kinase-like Gene Family AT1G28440 70.060 0.0 1419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241932g00011 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241932g00011 - - gmx:100819887 1550.41