Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241932g00010 ATGGACCATGCCAATATTGCTTATGATATGGTCATGGTGGCTCTATCCATATCTCTTATAGTTCTTGGTGTTGTTCTGTTTCTTGCTTGCAAGAAAAAGCCGGTTGAATCCGAGGAAACACTTCCAGTAAAATTTTGTGCTCGTGCATACCCTTTAATGGAACTTGATGCTGCCACTGATGGCTTCAACCATAGGAGAATTGTTGGCCAGGGTCGCCTAGGAACGGTTTATGCTGCGACGCTATCGAATGCAGAGCTTGTAGCTGTGAAGAGGATCCACCCTTTTCTTGTTTTGAGCAATGCAGGCTTTGGATTCTCATCTGTGTTGAAGTGGCTCTCATTGGCACAACACCCCAACGTTGTTCCAATCATAGGATTCTCCGAGGCACCGGGTGAAAGAGTTGTAGTCATGGAGTTTGTCAGAATGGCAAGCTTGGAATTCTATTTACAACAAAACCAAGATGGTGTTTCACTTCTGGATTGGAGCCAGAGGTTTAGAATTGCAGCAGGTGTAGCTAGAGGGCTTCAATACCTGCATGAAGTGGTAGCACCAAACATAGTACATGGTTGTGTTAAGTCCTCTAATGTTCTTATTGATGTGAATTTCTGTGCCAGGGTTTCTGACTATGGACTTAACTTTTTGGCACCAATGGAGAAGAGAGGTGTAGTGGGGTATGTGGATGGTGAGTATTGGAATGAGAGAGGGGGTGGTGCTACTAAAGAGAGTGATGTTTATGGTTTAGGTGTGGTGCTTTTGGAGCTTCTAAGTGGGAGAGGGTGTGAGGGAGGGTCATTGGCACATTGGGCATTGCCTTTGATTAAGGAAATGAGTTTTGGTGAAGTTTTAGATGGTAGGCTTGTGATTCCTTCTGATATTAGTCCTTTGGTTAGATTGGCCAAAGTTGCTTCAGCTTGTGTTGGTAATCCAAGGAAGTGTAGGCCTAGTGTGGCTCAAGTTGCTACCATTTTGAATGATTTGGAAATAGAAGCCCAGATGTTCGCTGTTGAGTCAAACAACCAAAAGCCCCAAATGAGCGCAATATCCTTCTCCCAAACACCTAAGGAGTCCAATATGCAGCTTCGTGCGAACTTTCTATTCCTTCCAAATTTAGAAAATATCGCCAGGAGCCCGAAGAAGTGGAACTAA 1146 0.4424 MDHANIAYDMVMVALSISLIVLGVVLFLACKKKPVESEETLPVKFCARAYPLMELDAATDGFNHRRIVGQGRLGTVYAATLSNAELVAVKRIHPFLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEAPGERVVVMEFVRMASLEFYLQQNQDGVSLLDWSQRFRIAAGVARGLQYLHEVVAPNIVHGCVKSSNVLIDVNFCARVSDYGLNFLAPMEKRGVVGYVDGEYWNERGGGATKESDVYGLGVVLLELLSGRGCEGGSLAHWALPLIKEMSFGEVLDGRLVIPSDISPLVRLAKVASACVGNPRKCRPSVAQVATILNDLEIEAQMFAVESNNQKPQMSAISFSQTPKESNMQLRANFLFLPNLENIARSPKKWN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241932g00010 381 SUPERFAMILY Protein kinase-like (PK-like) 39 323 IPR011009 -
Stsc241932g00010 381 Pfam Protein tyrosine and serine/threonine kinase 65 320 IPR001245 GO:0004672|GO:0006468
Stsc241932g00010 381 Gene3D Phosphorylase Kinase; domain 1 28 139 - -
Stsc241932g00010 381 ProSiteProfiles Protein kinase domain profile. 62 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241932g00010 381 PANTHER OS01G0253100 PROTEIN 47 327 - -
Stsc241932g00010 381 FunFam serine/threonine-protein kinase-like protein ACR4 29 139 - -
Stsc241932g00010 381 Gene3D Transferase(Phosphotransferase) domain 1 141 351 - -
Stsc241932g00010 381 FunFam Receptor protein kinase CRINKLY4 141 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241932g00010 Stsc-Chr241932 46164 48097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241932g00010 47 340 Receptor kinase-like Gene Family AT3G59420 38.312 9.46e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Stsc241932g00010 PK_Tyr_Ser-Thr 2.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241932g00010 - - vun:114187437 552.362