Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241932g00009 ATGTCTGATGTGCGTAACCTTCATCCTCTCATTGATGAGTTCATACCAACGCTTCAAGGAGAGAATGGCATCTGTTATACACACCCAGAGAAGCTACCTGGAGTAAATAAAGATGGACAAATCCGGCACTTCTTCCACAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACCGAAGAAGACGGAAGCGAAACACGGTGGCACAAGACAGGAAAAACAAGGCCGGTTGTCACCGGCGGCCTAGTGAAGGGTTTCAAGAAGATTCTAGTACTATACACAAACTATGGAAGGCAAAGAAAGCCTGAGAAAACTAGCTGGGTGATGCACCAATACCATCTTGGAAGCAATGAAGAAGAGAGAGATGGTGAACTTGTTGTTTCAAAAGTGTTCTACCAAACACAACCTAGACAATGCGGCAATTCCATTATCATAAAGGAAGATGATGATCTTCCCTATGAAAAGATATTGATGATGGATAATAGTAGTAAGAAGCACAACAACAACAATGATGATGATGATATCAGAATACCTAGAAATGCTGCTGCTGATGCTCCTCTTGTGGATTACTACATAAACTATGAACATAATAGAGAAAGTTGTTCACCTCATCAACTTATTCCAAACATGGTTGTCCAAGGTGATTCCTCTTCTCTTTATCGCTTTGCTTCGTCATCAGTGGACGGGAATGGAAACAAATCAAGACTTATTGACAGAAACTTGTAG 741 0.413 MSDVRNLHPLIDEFIPTLQGENGICYTHPEKLPGVNKDGQIRHFFHRPSKAYTTGTRKRRKVHTEEDGSETRWHKTGKTRPVVTGGLVKGFKKILVLYTNYGRQRKPEKTSWVMHQYHLGSNEEERDGELVVSKVFYQTQPRQCGNSIIIKEDDDLPYEKILMMDNSSKKHNNNNDDDDIRIPRNAAADAPLVDYYINYEHNRESCSPHQLIPNMVVQGDSSSLYRFASSSVDGNGNKSRLIDRNL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241932g00009 246 MobiDBLite consensus disorder prediction 58 76 - -
Stsc241932g00009 246 SUPERFAMILY NAC domain 9 138 IPR036093 GO:0003677|GO:0006355
Stsc241932g00009 246 MobiDBLite consensus disorder prediction 52 76 - -
Stsc241932g00009 246 FunFam NAC domain-containing protein 73 1 142 - -
Stsc241932g00009 246 ProSiteProfiles NAC domain profile. 1 138 IPR003441 GO:0003677|GO:0006355
Stsc241932g00009 246 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 166 IPR044799 GO:0003700
Stsc241932g00009 246 Pfam No apical meristem (NAM) protein 8 119 IPR003441 GO:0003677|GO:0006355
Stsc241932g00009 246 Gene3D NAC domain 2 142 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241932g00009 Stsc-Chr241932 41501 44814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241932g00009 3 158 NAC Transcription Factor Family AT4G28500 78.481 4.15e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241932g00009 NAM 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241932g00009 - - qsu:112011694 326.25