Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241932g00006 ATGGGGTTGATTGATCTCAACACGACTGAGGAAGATGAAACACAGACACTATTATCTGGTTCTACAGGGTCTGCTTCATCACCTTCTCACTCTGGTATAAGCACTTCAGCTTCAGCTTTGGCTTCACCTTCTTCTTCTTCTTCTGTGTGCTTGGAGCTATGGCACGCTTGTGCAGGCCCTATGATCTCTCTCCCAAAGAAAGGAAGTGTTGTTGTGTACTTGCCTCAAGGCCACTTTGAACAGGCTCAGGATTTTCCCCTCACTGACTATAACATCCCACCTCATGTGTTCTGTCGTGTTCTTGATGTAAAGCTCCATGCAGAGGAAGGCAGTGATGAAGTCTATTGCCAGGTCTTGCTGGTTCCTGAAAGTGAGCAAGTGGAGAAAAACTTGAGGCATGGGGTAGTTGATGTTAACGGTGAAGAAGATGATACTGAAGCTGTGGTGAAGTCAACAACACCCCATATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACCCATGGTGGATTTTCTGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCTCTGGATTACACTCAACAAAGGCCTTCACAGGAGCTTGTGGCGAAGGATTTGCATGGCCTTGAATGGAAGTTTAGACATATATACAGGGGGCAGCCACGGAGACATTTGCTCACAACTGGATGGAGTGCATTTGTGAATAAGAAGAAGCTTGTGTCTGGGGATGCTGTGTTATTTCTTAGGGGCGACGATGGGGAATTAAGACTTGGGATTCGTAGGGCTGCTCAATTGAAGAATGGTGGTATCTTTGCTGCTCCCTCTGTTCAGCAACTGAATCCTGGCTCAGTCATGAATGTTGTAAATGCTTTGTCTTCGAGAAGTGCCTTTAGTGTTTGCTATAATCCAAGGGTTAGCTCCTCGGAATTCATCATACCGCCACACAAATTCTTAAAGAGCCTTGATTTTTGTTATTCAGTTGGAATGAGGTTCCAGATGCGCTTCGAAACTGAAGATGCTGCCGAGCGCAGATTCACTGGATTAATTGCTGGCATTGGTGATGCGGATCCGGTTAGATGGCCAGGTTCAAAATGGAGATGCCTGTTGGTAAGGTGGGATGATGTTGAAGCCAGTAGGCATAACAGGGTTTCCCCATGGGAGATTGAGCCATCTGGGCATGCTTCCACTTCGAATAACTTGATGGCAGCTGGTTTGAAGAGGAGCAGAATCGGTTCTTCAGGGAAACTAGAATTTCCACTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTTAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAGCCCTTATGATGGTATTAATGCTCAGAGTCCAAGGTTATCCGAGTTAGGGAGGTGTTATCCTGGCTCCATTGGTTCTGGGACTCAGGTTGTAGGAAGTAATATGAGAATCCCTCAACTTGGATCTGATTTTTCCTACAACAATGGCACAGGCTTTGGCGAATCATTTCGGTTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCCAACCATATGGAAGGGCCTTGTCTGTTGATGAGGCTCGCACAAATGGTCGCTTTGGACTTTTTGATGGTCATCATCTGGTTAGCCCCCGAAGTGGATGGTCGAACCAGGTGCATGACACTTCATCACATCTGCATGCATCTGTTGCATCAATGCAAGTGTCATCTCCTTCATCTGTGTTAATGTTCCAGCAAGTAGTTAATCCTGTTTCGAATTCGGAGCATATTAACAAGAGTAACCAGGAGATAGATGGTAAAGTCCATTATCAACGTTCATACCCAACTGAAGTGAAAGGTAGAACATTTGCATCGTTCCCAACCGATGAGCCCATTTTATCTGGAAGAGCTAAGGGAGACATGAACTCGTTTGGAACATTTAACTTCCATAATCAGTTGGGCAGTTCACGGTCTATTGATTCAGCATTGGCATTGAGAGAAAGTCAAGAGCTGGCATCTTCATGTAAAAGTAGCTGCAGACTCTTCGGTTTCTCTTTAACTGAGGATCCTCACATTGCAAACAAAGAGGCTGCACCATCTTTGATCACTCGGCAATTGAATTCAGGCCCTACGTTTACTCAGCGCACCGAGGATAATTTTCCTCCCGGTCATTCTCTGAGGACTAAAGCTGTTGAGAGTAACTTCACCAAAGGTGTATTGCAGTGTTGA 2205 0.454 MGLIDLNTTEEDETQTLLSGSTGSASSPSHSGISTSASALASPSSSSSVCLELWHACAGPMISLPKKGSVVVYLPQGHFEQAQDFPLTDYNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEKNLRHGVVDVNGEEDDTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKNGGIFAAPSVQQLNPGSVMNVVNALSSRSAFSVCYNPRVSSSEFIIPPHKFLKSLDFCYSVGMRFQMRFETEDAAERRFTGLIAGIGDADPVRWPGSKWRCLLVRWDDVEASRHNRVSPWEIEPSGHASTSNNLMAAGLKRSRIGSSGKLEFPLPNGIGTSDFGESFRFRKVLQGQEILGVNSPYDGINAQSPRLSELGRCYPGSIGSGTQVVGSNMRIPQLGSDFSYNNGTGFGESFRFQKVLQGQEIFPSQPYGRALSVDEARTNGRFGLFDGHHLVSPRSGWSNQVHDTSSHLHASVASMQVSSPSSVLMFQQVVNPVSNSEHINKSNQEIDGKVHYQRSYPTEVKGRTFASFPTDEPILSGRAKGDMNSFGTFNFHNQLGSSRSIDSALALRESQELASSCKSSCRLFGFSLTEDPHIANKEAAPSLITRQLNSGPTFTQRTEDNFPPGHSLRTKAVESNFTKGVLQC 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241932g00006 734 FunFam Auxin response factor 155 259 - -
Stsc241932g00006 734 CDD B3_DNA 155 257 IPR003340 GO:0003677
Stsc241932g00006 734 SUPERFAMILY DNA-binding pseudobarrel domain 150 263 IPR015300 -
Stsc241932g00006 734 Gene3D - 155 259 IPR015300 -
Stsc241932g00006 734 MobiDBLite consensus disorder prediction 8 38 - -
Stsc241932g00006 734 Gene3D - 321 394 - -
Stsc241932g00006 734 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Stsc241932g00006 734 FunFam Auxin response factor 320 391 - -
Stsc241932g00006 734 MobiDBLite consensus disorder prediction 1 38 - -
Stsc241932g00006 734 Pfam Auxin response factor 284 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc241932g00006 734 SMART B3_2 157 259 IPR003340 GO:0003677
Stsc241932g00006 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 686 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc241932g00006 734 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241932g00006 Stsc-Chr241932 27424 31370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241932g00006 45 511 B3 DNA Binding Superfamily AT5G60450 49.588 8.72e-145 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc241932g00006 B3 4.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241932g00006 K14486 - gmx:100789906 1090.1