Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241931g00006 ATGGAGGAGGGTGCTACTACTTGCAATGTCAATGGCAATGGCGGTTATAGTATGATGAGTTTTGGAGAGAACATGATGATGAAGAGTAATAGTAATAGTAGTAGTAATAGTGGGATTTATCCAATCATAATGATGCCTTTACTCACTAATACTTGGCATAGTGGTAGCAGTCACAATCCAGCCACTAATCCTGTTCCTAATCTTAATTACTCTAATGCTAATCCTAATAATAGTAATGATAATGCAGACACAAATACTTGCTTCCCTCTTGTTCCCATGCTTACCACTAATACCAGTCATCACGGACCAAATCGCAACAACACCTCCTCCTCTATCATGCTCCACAATAATACACAAAACACCAACACTAACACTGGTATATGTTACTTTATGGACATACACAACAACAACAACAACCACCATGGAAGCTCTTCTTCTTCTTCTTCGGCTTTGAAGGCTAAGATCATGTCTCATCCTCACTATCACCGCCTCTTGGCTGCATACGTTAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTGGAAGAAGCATGTGAATCTGCAGCGAGAATGGGAGCANNNNNNNNNNAAGATCCAGCGCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTTATCAAGTACGAGCAAGAACTCTCCAAACCCTTCAAGGAATCCATGCTTTTCCTTCAGCGCATGGAGTCCCAGTTCAAATCCCTCTCCATTTCTCCTTCCAACTTCGCCGGTAATGAAGGTGTTGATGGGAACGGATCATCAGAGGATGATGTCGATTTAGACAACAACAATGCAACAATCGATCCGCAAGCAGAGGACCGCGAACTGAAGGGCCAGCTTTTACGCAAGTACAGTGGATATCTTGGTAGTTTGAAGCAAGAATTCATGAAGAAGAGGAAAAAAGGCAAACTCCCTAAAGAAGCAAGGCAGCAGCTACTTGATTGGTGGAGCAGACATCACAAATGGCCTTACCCATCTGAATCACAGAAGGTGGCGCTTGCAGAGTCGACAGGTTTGGATCAGAAACAGATAAACAACTGGTTTATTAATCAAAGGAAACGGCATTGGAAGCCATCAGAGGACATGCAGTTTATGGTGATGGAACCAACCCATCCACATTATTTCATTGACAATGTTGTGGCCAATCCCTTTCCCATGGATTTTTCGCACACAATGCTTTGA 1206 0.4303 MEEGATTCNVNGNGGYSMMSFGENMMMKSNSNSSSNSGIYPIIMMPLLTNTWHSGSSHNPATNPVPNLNYSNANPNNSNDNADTNTCFPLVPMLTTNTSHHGPNRNNTSSSIMLHNNTQNTNTNTGICYFMDIHNNNNNHHGSSSSSSSALKAKIMSHPHYHRLLAAYVNCQKVGAPPEVVARLEEACESAARMGAXXXXDPALDQFMEAYCEMLIKYEQELSKPFKESMLFLQRMESQFKSLSISPSNFAGNEGVDGNGSSEDDVDLDNNNATIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEPTHPHYFIDNVVANPFPMDFSHTML 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241931g00006 401 ProSitePatterns 'Homeobox' domain signature. 341 364 IPR017970 GO:0000981|GO:0006355
Stsc241931g00006 401 MobiDBLite consensus disorder prediction 251 280 - -
Stsc241931g00006 401 CDD homeodomain 315 367 IPR001356 GO:0003677
Stsc241931g00006 401 Gene3D - 308 370 - -
Stsc241931g00006 401 Pfam KNOX2 domain 200 243 IPR005541 GO:0003677|GO:0005634
Stsc241931g00006 401 SMART KNOX2_2 194 245 IPR005541 GO:0003677|GO:0005634
Stsc241931g00006 401 MobiDBLite consensus disorder prediction 55 117 - -
Stsc241931g00006 401 ProSiteProfiles 'Homeobox' domain profile. 303 366 IPR001356 GO:0003677
Stsc241931g00006 401 SMART ELK_2 283 304 IPR005539 GO:0003677
Stsc241931g00006 401 Pfam ELK domain 283 304 IPR005539 GO:0003677
Stsc241931g00006 401 ProSiteProfiles ELK domain profile. 283 303 IPR005539 GO:0003677
Stsc241931g00006 401 SMART KNOX1_2 149 193 IPR005540 GO:0003677|GO:0005634
Stsc241931g00006 401 SMART HOX_1 305 370 IPR001356 GO:0003677
Stsc241931g00006 401 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 99 372 - -
Stsc241931g00006 401 Pfam Homeobox KN domain 323 362 IPR008422 GO:0003677|GO:0006355
Stsc241931g00006 401 Pfam KNOX1 domain 150 189 IPR005540 GO:0003677|GO:0005634
Stsc241931g00006 401 SUPERFAMILY Homeodomain-like 305 380 IPR009057 -
Stsc241931g00006 401 FunFam Homeobox protein knotted-1-like 2 308 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241931g00006 Stsc-Chr241931 29750 34410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241931g00006 130 401 Homeobox Transcription Factor Family AT1G62360 75.087 5.58e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc241931g00006 KNOX2 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241931g00006 - - jcu:105649291 463.766