Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241929g00013 ATGATGCCTCTGCATGAGTTGTACCGCAAGGCCAAAGAGAACCTTGATTATTCTAAAGAGATCAATACCACAAGTGCACCTGAACCTGAGAATGATTTCTATGAGCTGGTTTGGCAAAATGGTCAGATTTCAATGCAGGGTCAGTCAAGTAGAGGTAGAAAGAGTCCAACTTGTAAGACTTTGCCATCTCATTCTCCCAAAGATAGGGATGTAGTGACCAACAATGTTAATATGATGAAGATGGGCAAGTTTGGGGATTCAGAAAGTGGATTCAATGAGATTAGAACGCAGGTCCCATCAGCTGAACTGGGTTTAAGCCAAGATGAAGATGTCATACATTGGTTGAATTATGGAATAGATGAATCTTTGCCACATGACTATGGTTCTGATTTCATACATGAACTCTCAGGGGTCACCATGAATGACATCCCTCCCTTAAATAGCTTATCTTTATTGGACAAAAGAAGCAATTGCAATCAGGTTTTTAGGGACTCTCACAAGAACTATGCACAAGGGGTCCTTCACAAGGACTTTTCTGTCATGGCTAGAGGAGAGATTGAGATCCCTGGAACCAAAGCTAGCACAAGTCAATTTTGCCAACCATCATCATATCAATGTCAAGGATCATTTGCATCTGTTAGGTCCAGAGCATCAGAGATAACTGAGAATAATGGAAGTAACCCTGCTCATCAAGTTCCTTGTGGGGAAATGCCTCAGATTTTCCCATCTGTCTCAAGTGGCTTTTCTGGGTTAAAGTTGGATAAGCAAGATCAGATTATGTGCAGCAGTAGTTCCACTATAATGAATTTCTCCCATTTTGCTAGACCTGCTGCTATTGTCAAAGCTAATCTTCAGAACATTGGGTTGTCTTCATCAGCATCAGATGGTATTGAAAACAAGATTAAAGGTGCTGCTGCAACCACAAGCAATCCTCTTGAATCAACAAAAGCTGGTTCTAGTGGCAAGCCTCCGAAAGAATCAGGCATGAAGGAGCAGAAGGTTATGGAGCCATCTAAGGCCGATTTGAAGCAGTTGGAGCCAAAATCTCTTGAAGGGAATGCTACTGTTTTGAGGAAACCTGATCCTGCTCGAAAAGAAGATGCCTCAAAGATTTATCAAAGTTCCAATCTACTTCTTTGTGAAAGTACCAATAAAGGAGAGGAAGCTGTTGTTAAAAATATGGAGCCTGCAGTAGCCTCTTCATCTGTTTGCTCCGGCAATGGCCTAGAGAGGATTTCAGACAACCCGAATCAAAATTTGAAGCAAAAAAGACAAGACACTGAGGACTCTGAGTGCCACAGTGAAGATGTGGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGGTCCAACACGAGGTGTTAAGAGAAGCCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGAGCATTACAGGAGCTCATACCAAACTGCAATAAGGTTGACAAAGCTTCAATGCTGGATGAGGCAATCGAGTATCTCAAAACACTTCAACTCCAAGTTCAGATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCATCCACAGATGGCTTCCTTTTCTCCCATTGGTGTTGGCATGCAGATGGGATTGGGAATGGGTTATGGAATGGGTATGCCTGACATGAATGGTGGATCTTCTAGATTCCCAACTCATCCTCCTGCTGCTGCACCTATGCCTGGACCCTCAGCATTACAGGGAATGGGTTATGGCCAGGGCCTTCCAATTCCATCAATGCCACGTGCTCCTCCCATGTATTCTTATCCGGTAGAGCCTCTTGCAAACTCATCAACCTTACAACCAAGTCCAAATGCCAGTGGAACAGCAGCACTCATGGAAACTGTGAATCCGGCTTCAGCATCAAACCAAAAGGATCCAATGCCAAATGTGAACTCACAATTGATTCTTTGCAAGTGA 1968 0.4334 MMPLHELYRKAKENLDYSKEINTTSAPEPENDFYELVWQNGQISMQGQSSRGRKSPTCKTLPSHSPKDRDVVTNNVNMMKMGKFGDSESGFNEIRTQVPSAELGLSQDEDVIHWLNYGIDESLPHDYGSDFIHELSGVTMNDIPPLNSLSLLDKRSNCNQVFRDSHKNYAQGVLHKDFSVMARGEIEIPGTKASTSQFCQPSSYQCQGSFASVRSRASEITENNGSNPAHQVPCGEMPQIFPSVSSGFSGLKLDKQDQIMCSSSSTIMNFSHFARPAAIVKANLQNIGLSSSASDGIENKIKGAAATTSNPLESTKAGSSGKPPKESGMKEQKVMEPSKADLKQLEPKSLEGNATVLRKPDPARKEDASKIYQSSNLLLCESTNKGEEAVVKNMEPAVASSSVCSGNGLERISDNPNQNLKQKRQDTEDSECHSEDVEEESVGVKKAGPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMHPQMASFSPIGVGMQMGLGMGYGMGMPDMNGGSSRFPTHPPAAAPMPGPSALQGMGYGQGLPIPSMPRAPPMYSYPVEPLANSSTLQPSPNASGTAALMETVNPASASNQKDPMPNVNSQLILCK 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241929g00013 655 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 457 506 IPR011598 GO:0046983
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 304 321 - -
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 401 467 - -
Stsc241929g00013 655 SMART finulus 463 512 IPR011598 GO:0046983
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 421 445 - -
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 326 346 - -
Stsc241929g00013 655 FunFam Basic helix-loop-helix transcription factor 452 515 - -
Stsc241929g00013 655 PANTHER TRANSCRIPTION FACTOR PIF3 2 651 IPR044273 GO:0003700|GO:0006355
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 44 69 - -
Stsc241929g00013 655 CDD bHLH_AtPIF_like 457 519 IPR047265 -
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 304 369 - -
Stsc241929g00013 655 Pfam Helix-loop-helix DNA-binding domain 461 507 IPR011598 GO:0046983
Stsc241929g00013 655 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 460 533 IPR036638 GO:0046983
Stsc241929g00013 655 Gene3D - 453 515 IPR036638 GO:0046983
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 401 420 - -
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 453 467 - -
Stsc241929g00013 655 MobiDBLite consensus disorder prediction 631 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241929g00013 Stsc-Chr241929 56066 59172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241929g00013 2 564 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.739 5.38e-73 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241929g00013 HLH 5.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241929g00013 K12126 - gmx:100794974 640.573