Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241929g00003 ATGGGCGGAGGTGGAGGAGCGACGCCCAACGCGGAGGCGCAGTATTCGACGGCCAAGACCTCTGTGTGGTGGGACATAGAGAACTGCCACGTCCCCAAAGGCTGCGATCCCCACGCCATCGCTCAGAACATCAGCTCCGCCCTGGTACGCATGAATTACTGTGGCCCTGTCTCTGTCTCCGCCTACGGCGACACCACTCGCATCCCCGCCTCTGTACAGCACGCCCTCTCCAGCACCGGCATCTCCCTCAACCATGTCCCCGCTGGCGTTAAAGATGCTAGCGACAAGAAGATTCTTGTTGACATGCTGTTTTGGGCAGTGGACAATCCCGCACCTGCTAATTATTTATTAATTTCTGGCGACAGAGACTTCTCGAATGCTCTCCATCAACTGCGGATGAGAAGATATAATATTCTTCTTGCACAGCCTCAGAAAGCATCTGCACCACTAGTAGCAGCTGCTAAGAGCGTATGGCTTTGGACTAGTCTTTTAGCTGGAGGGCCTCCACTAACTAGTGGTGAATCACAGTTACTTGGTAATAATAGCCTTGTAACAAGCTCCGACACCTTACCAATTCCAGTCACTAGTGTCGCTCAGACACAGCCACAGGCCGATTCCTACACTGAAGTGCATGTAGGAAATCAGAAGTTTCCAAACGGAGGAAGGGGATTCGATTCTAGGTATCAGGGGAAAACGAATTGGAGAAACCCGGGTCAGCCAAATGGACCCAAGGCCATGAATCCACCGCCAGTTGTTTCCCAAGATAATCGTAACAATTTAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTTTCTTCAAGTGGACCTGCTCCAAATTTTATTCGTGGCAATACTGAACAGTTATGGAACAATAGCAATAATGTACAGGGCAATCATCAAAATCCTTATTCACAGCCTCCTTTAAGACCAAACAGTTTTCCACTGCAACCTTCTTTTGCATCGAATAATTCTTATCCCCCAAATTCCCATACTTTTGCAAATTCACTGGTGCCACCTAGGACTGGTGGCCCTGGCTTCACTGCAGGACCACCATCAAATGTGCCAGAAATTGGTAATCTGAACATTTCTGGATATCCCAATGGTGTTCATAATCCACGTCCTGTTAAGCAACGCAGTGGGGAGTTGAAGCAGAATCCTAACAATAGTGCTTCGCCTCCAGTAACATCAACTGTTGAACAAAATGGACATATGGTACATAGCAATAGCACACAACATTTACACCAAGGCTATCCAAACGGAAATGGTTCTGACCATCAACCTACGTCATTGGCAGGTAATAATAACCATTCTGGCAATGGCATGTGGGGATCTCCAGGGTGCCCTAAACCGTCTGAATATGTCCAAGGCCTTATAGGGGTTGTTTTACTAGCCTTGAATTCTCTAAAAAATGAGAAGATTATGCCAACCGAGGCAAATATAACTGATTGCATCCGATATGGAGATCCCAGGCATCGCAACACTGATGTTAAGAAAGCTTTGGAGAGTGCTATTGAGCAGCAGATGGTGGTGAAGCAGAATTTAGGTGCTTTGCAGCTGTATGTTGGTAAGAATGATAAACTTTGGAAATGCATAAATCCTATAGCTGGTAATCCTAAGCAGCACTCAAAGGAAACCTGGGATGAAGTTCAAAAGTTTCTAACAACTTCTTCAGGAAGATCAGCATTAATGGGTACTCAGTGCAAGTATGAAGCAGGTATAGTCATGAAGAATATGTGCTTTAAGGAACTTTCTTTGGGTGATGTACTTCAAATATTGAACATGTTGATTACTCATAAAAAATGGATTCTGCATCATCAGTCTGGCTGGCAACCACTTAATATTACTCTTCCTGAGACTAGCCCCAATTCAGGGGTTGTAGCAAGCACATAA 1893 0.4559 MGGGGGATPNAEAQYSTAKTSVWWDIENCHVPKGCDPHAIAQNISSALVRMNYCGPVSVSAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLTSGESQLLGNNSLVTSSDTLPIPVTSVAQTQPQADSYTEVHVGNQKFPNGGRGFDSRYQGKTNWRNPGQPNGPKAMNPPPVVSQDNRNNLNSYRPGNFNPNVSSSGPAPNFIRGNTEQLWNNSNNVQGNHQNPYSQPPLRPNSFPLQPSFASNNSYPPNSHTFANSLVPPRTGGPGFTAGPPSNVPEIGNLNISGYPNGVHNPRPVKQRSGELKQNPNNSASPPVTSTVEQNGHMVHSNSTQHLHQGYPNGNGSDHQPTSLAGNNNHSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNEKIMPTEANITDCIRYGDPRHRNTDVKKALESAIEQQMVVKQNLGALQLYVGKNDKLWKCINPIAGNPKQHSKETWDEVQKFLTTSSGRSALMGTQCKYEAGIVMKNMCFKELSLGDVLQILNMLITHKKWILHHQSGWQPLNITLPETSPNSGVVAST 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241929g00003 630 MobiDBLite consensus disorder prediction 251 307 - -
Stsc241929g00003 630 Gene3D - 10 162 - -
Stsc241929g00003 630 Pfam OST-HTH Associated domain 567 616 IPR025677 -
Stsc241929g00003 630 MobiDBLite consensus disorder prediction 212 445 - -
Stsc241929g00003 630 MobiDBLite consensus disorder prediction 379 442 - -
Stsc241929g00003 630 Pfam NYN domain 19 155 IPR021139 GO:0004540
Stsc241929g00003 630 PANTHER LIMKAIN B LKAP 14 512 IPR024768 GO:0005777|GO:0010468
Stsc241929g00003 630 MobiDBLite consensus disorder prediction 315 337 - -
Stsc241929g00003 630 CDD PIN_limkain_b1_N_like 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241929g00003 Stsc-Chr241929 9139 13088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241929g00003 11 202 C2H2 Transcription Factor Family AT5G61190 72.308 1.35e-87 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241929g00003 - - gmx:100794608 1072.77