Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241928g00007 ATGACGCTTCCTACTGATTCACAACCACCACCTTCTCCTCCTCCACCGGATTCCGCCACCGACACCGCCACATCTAACGGCGAAACTACCACCACCGCCACCGCCACCGCCAGCTCCTCATCTTCCGAAAACCCACCGGATTCCCTGCCAACACCGCCGCAAGAGCTCCAGCTCCCAATTTCATGGCCGCAAGACGGAACCTTGAGCCTCGAATGGATCCACAATCTGATGCAGTGCTTCGATTGGTCTTCGAGGAACCTTCCTCCTTCCGAGTTTCCTTCCGTTCTTCCAGTTCAGGCCTTCGACTCTCTCATCCTCGTTGCTTCCAAGATGCTCCATAAGGAACCCAATTGCGTCACCGTTGATCCGTTTCGCCCTAATTCCGGCTCGACGGCGTCCGTGGTGGTCGTTGGAGACGTTCACGGTCAGTTGCATGATCTGCTTTTTCTCCTCAAAGACGCAGGTTACCCTTCCGATGATCGAATCTTCGTCTTCAATGGTGATTACGTTGATCGTGGAGCTTGGGGACTCGAAACTTTCATGCTCTTGTTAGCTTGGAAGGTGTTTATGCCTCATAATGTATATCTGCTACGTGGGAATCATGAATCAAAATACTGCACATCAGTCTATGGTTTTGAGAAGGAAGTGATGGCAAAGTATGGTGATAAAGGTAAGCATGTGTACCGCAAATGCTTGGGATGCTTTGAGGGTCTTCCTTTGGCTTCCATTGTAGCAGGGTGTGTATTCACAGCGCACGGGGGACTCTTCCGCAGTGTGACAGTGACTCCATCAAAGAGATTAAAAGGGAAGAAGAATAGAAAGATTCATCTTAATCATGATAGCAAAACCTTAACTCTTGGTTCCTTGGAAGAATTGTCTAAGGCTCGACGGTCGGTTCTTGATCCTCCTTGGGAAGGCCCAAACTTGATTCCTGGTGATGTTTTGTGGTCTGATCCGTCGAAAAATCCTGGTCTTGCCCCGAACAAAGAAAGAGGCATTGGCTTGTTGTGGGGTCCCGATTGTACTGAAGAATTTTTGAAGAAGTATCAATTAAAGTTGGTCATCAGGTCTCATGAAGGTCCTGATGCTAGGGAAAAGAGGGAGGGTTTAGATGGAATGTCTGAAGGTTACACCATTGATCATGTTGTGGATTCTGGAAAATTGATCACCCTTTTTAGTGCTCCAGATTACCCGCAATTTCAGGCAACAGAGGAGAGGTATAACAATAAGGGAGCCTATGTTGTCCTTGAACCCCCAAATTTTGACAATGCTATATTTCATGGATTTACAGCTGTTACTCCAAGGCCAAAGGTGAATGCCTATTATAATTTTGAAGAGGTGATAGATTCTGACGAAGAATTGGACTTGGAGTCCATGGTGACCTCTTGA 1389 0.4744 MTLPTDSQPPPSPPPPDSATDTATSNGETTTTATATASSSSSENPPDSLPTPPQELQLPISWPQDGTLSLEWIHNLMQCFDWSSRNLPPSEFPSVLPVQAFDSLILVASKMLHKEPNCVTVDPFRPNSGSTASVVVVGDVHGQLHDLLFLLKDAGYPSDDRIFVFNGDYVDRGAWGLETFMLLLAWKVFMPHNVYLLRGNHESKYCTSVYGFEKEVMAKYGDKGKHVYRKCLGCFEGLPLASIVAGCVFTAHGGLFRSVTVTPSKRLKGKKNRKIHLNHDSKTLTLGSLEELSKARRSVLDPPWEGPNLIPGDVLWSDPSKNPGLAPNKERGIGLLWGPDCTEEFLKKYQLKLVIRSHEGPDAREKREGLDGMSEGYTIDHVVDSGKLITLFSAPDYPQFQATEERYNNKGAYVVLEPPNFDNAIFHGFTAVTPRPKVNAYYNFEEVIDSDEELDLESMVTS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241928g00007 462 CDD MPP_PP7 62 443 IPR041754 -
Stsc241928g00007 462 ProSitePatterns Serine/threonine specific protein phosphatases signature. 197 202 IPR006186 GO:0016787
Stsc241928g00007 462 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 35 460 - -
Stsc241928g00007 462 MobiDBLite consensus disorder prediction 19 45 - -
Stsc241928g00007 462 SUPERFAMILY Metallo-dependent phosphatases 93 432 IPR029052 -
Stsc241928g00007 462 SMART pp2a_7 96 436 IPR006186 GO:0016787
Stsc241928g00007 462 MobiDBLite consensus disorder prediction 1 61 - -
Stsc241928g00007 462 FunFam Serine/threonine-protein phosphatase 80 457 - -
Stsc241928g00007 462 PRINTS Serine/threonine phosphatase family signature 196 220 IPR006186 GO:0016787
Stsc241928g00007 462 PRINTS Serine/threonine phosphatase family signature 293 320 IPR006186 GO:0016787
Stsc241928g00007 462 PRINTS Serine/threonine phosphatase family signature 233 259 IPR006186 GO:0016787
Stsc241928g00007 462 PRINTS Serine/threonine phosphatase family signature 387 403 IPR006186 GO:0016787
Stsc241928g00007 462 PRINTS Serine/threonine phosphatase family signature 133 160 IPR006186 GO:0016787
Stsc241928g00007 462 PRINTS Serine/threonine phosphatase family signature 163 190 IPR006186 GO:0016787
Stsc241928g00007 462 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241928g00007 462 Gene3D - 91 455 IPR029052 -
Stsc241928g00007 462 Pfam Calcineurin-like phosphoesterase 133 361 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241928g00007 Stsc-Chr241928 44264 47968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241928g00007 59 353 Calmodulin-binding Proteins AT5G63870 70.270 9.36e-157 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241928g00007 K04460 - gmx:100810695 780.4