Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241924g00006 ATGGAGGAACGCTACGAGCCATTGAAGGACCTTGGTTCTGGCAATTTCGGTGTTGCAAGGTTGGCCAAGAACAAGAAAACTGGCGAGCTTGTTGCGGTCAAATACATAGAAAGAGGCAAGAAGATTGATGAGAATGTTCAGAGGGAGATAATTAATCACAGGTCTTTAAGGCATCCAAATATTATCAGATTCAAAGAGGTGCTGCTAACCCCTACCCATTTAGCTATTGTCCTGGAGTATGCTTCGGGTGGCGAACTCTTCGAGAGGATATGCACTGCTGGTCGATTTAGCGAAGATGAGGCAAGATATTTCTTCCAACAGTTGATTTCTGGGGTTAGCTACTGTCACTCAATGGAAATTTGTCATAGAGATCTGAAATTGGAAAACACCCTCTTGGACGGAAATCCATCTCCCCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGTCAGCTTTACTGCACTCTCAACCAAAATCAACAGTTGGAACTCCAGCATACATTGCTCCGGAGGTTCTGTCACGAAAGGAGTACGATGGAAAGATTGCAGATGTTTGGTCCTGTGGTGTGACCCTTTATGTCATGTTAGTTGGTGCATACCCTTTTGAGGATCCAGAAGATCCTAGAAATTTCAGGAAGACTATTGGGAGAATAATAGGTGTTCAGTACTCCATACCGGACTATGTTCGCGTTTCTGCAGAGTGTAGGAACCTTCTCTCTCGTATCTTTGTCGCCGACCCTGCCAAGAGGATCACCATCCCAGAGATAAAGCAGAACCCTTGGTTTCTGAAGAACTTGCCTAGGGAGATCATGGAAGCCGAAAAGAAAGGCAGCGAGGATACACAGAAAGACCAACCGAGCCAGAGCGTCGAAGAGATCATGCGGATCATACAAGAGGCTAGGACACCAGGGCCAAGATCTAAGGCTAGTGATGTGGGACAAACTGGAACTGGATCACTTGATGTTGAGGATGATGAAGTTGATGTCAGTGGTGACTTTGAACATGTGTGA 1008 0.4563 MEERYEPLKDLGSGNFGVARLAKNKKTGELVAVKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSAECRNLLSRIFVADPAKRITIPEIKQNPWFLKNLPREIMEAEKKGSEDTQKDQPSQSVEEIMRIIQEARTPGPRSKASDVGQTGTGSLDVEDDEVDVSGDFEHV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241924g00006 335 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241924g00006 335 MobiDBLite consensus disorder prediction 273 335 - -
Stsc241924g00006 335 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Stsc241924g00006 335 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Stsc241924g00006 335 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Stsc241924g00006 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Stsc241924g00006 335 SUPERFAMILY Protein kinase-like (PK-like) 3 271 IPR011009 -
Stsc241924g00006 335 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241924g00006 335 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Stsc241924g00006 335 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241924g00006 335 PANTHER SERINE/THREONINE KINASE 3 287 - -
Stsc241924g00006 335 CDD STKc_SnRK2 4 260 - -
Stsc241924g00006 335 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241924g00006 Stsc-Chr241924 27809 31192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241924g00006 4 279 CBL-interacting serine-threonine protein kinases AT4G24400 43.509 3.64e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc241924g00006 Pkinase 3.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241924g00006 K14498 - gmx:100817713 617.461