Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241921g00007 ATGGGTATCTGCATATCCATTGCATCTTCAGAGATTCATGGGCCCCCTAAAGAAGTTTATGATGAGAATGTGATAACATTTGGAGCAAACAAGGTTCAAGGTGGTAATCAAGGACTATGTTCTGCTTCTGCTTACTCTAAACAAGGGACCAAAGGGCTCAACCAAGATGCTGCTTCTATTTACCAGGATTATGGAATGGAAGATGGAACATTTTGTGGTGTTTTTGATGGGCATGGAAGGAATGGACGCATTGTGAGCAACATGGTTAACAGAAACTTATCTTCACTCATACTTAAGCAAAAGAGTGCCTTTGAAAGGATTAATAACATAGAAAATGGTGATTCCAACACCCTAAACAACCATGTTGACAATCATAAGGATCCAAACAATTTTGAGATATGGAAAGAAGCAGTTACAAGTGCTTTCAAGGTCATGGACAAGGAGATCAAGTTACAAGAGAATCTAGATTGTTCTTGCAGTGGAACAACTGCTATTGTTGTCATAAAACAGGGTGAAGGTCTAATCATAGCTAATTTGGGTGACTCAAGGGCGGTGTTGGGGAAAATCTGTGATGAACAACTCATGGCCATTCAATTGACCACAGATTTGAAGCCTGGATTACCAAGTGAAGCAGAAAGAATAAGGAAGTGCAATGGTTGTGTATTTGCACTAAAGGAAGAACCAAATATTCAAAGAGTGTGGATACCAAACTGTGAGAACTCACCGGGACTTGCCATGTCTCGCTCTTTTGGAGATTTCTTGCTCAAAGAACACGGTGTCATTGCCATCCCTGATGTTACATATTACCCTCTAACATCATCTGACCAATTCATTGTTCTTGCAAGTGATGGGGTGTCGGATGTACTAAGCAACATAGAGGTTGCAACAATAGTGTGGACCACAAACAATGAAGAGGAAGCAGCAAAGAAAGTGGTAGAAGCAGCCAATGCTGCATGGAGAAGGAAGTACCCTTTTTCCAAGATTGATGATTGCACTGTGGTTTGCCTCTTCCTAAACAACAAAAGCAAAAACAAAAGAAACTCAGGAATGTGGAAAGTGTAA 1062 0.4058 MGICISIASSEIHGPPKEVYDENVITFGANKVQGGNQGLCSASAYSKQGTKGLNQDAASIYQDYGMEDGTFCGVFDGHGRNGRIVSNMVNRNLSSLILKQKSAFERINNIENGDSNTLNNHVDNHKDPNNFEIWKEAVTSAFKVMDKEIKLQENLDCSCSGTTAIVVIKQGEGLIIANLGDSRAVLGKICDEQLMAIQLTTDLKPGLPSEAERIRKCNGCVFALKEEPNIQRVWIPNCENSPGLAMSRSFGDFLLKEHGVIAIPDVTYYPLTSSDQFIVLASDGVSDVLSNIEVATIVWTTNNEEEAAKKVVEAANAAWRRKYPFSKIDDCTVVCLFLNNKSKNKRNSGMWKV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241921g00007 353 SMART PP2C_4 30 336 IPR001932 -
Stsc241921g00007 353 Pfam Protein phosphatase 2C 110 317 IPR001932 -
Stsc241921g00007 353 SUPERFAMILY PP2C-like 41 340 IPR036457 -
Stsc241921g00007 353 Gene3D - 27 341 IPR036457 -
Stsc241921g00007 353 ProSiteProfiles PPM-type phosphatase domain profile. 41 338 IPR001932 -
Stsc241921g00007 353 CDD PP2Cc 41 338 IPR001932 -
Stsc241921g00007 353 PANTHER PROTEIN PHOSPHATASE 44 336 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241921g00007 Stsc-Chr241921 43767 51109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241921g00007 1 343 PP2C-type Phosphatase Gene Family AT5G26010 48.571 7.40e-98 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241921g00007 - - aip:107605550 619.002