Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241920g00010 ATGACCAGAAAGCCAATAAACGCAAGAAAACAGCACCATCATGTTCTATTGATCGATCTCCTTATTCTCTATTATTTTGTCTTGTTCTTCCCTGCCATAACCACAAAATCCGAAGCTAGATGCAGTTCTGGCTGCGACCTCGCACTAGCTTCCTATCACCTATGGCCAGGAACAAACCTCACTTACATCGCCACCATCTTCGGAAAACCACAATCAGAGATTCTCAAATACAACCCTGGAATAAAAAACCCTGACTCCATTGAGGATCAAAAAAGGATCAACGTTCCCTTCTCATGTGAGTGCTTCAACAGTGATTTCTTAGGTCACACTTTCTCATACAGAACACAACACGGTGACACGTACAATAACATTGCTAAGCATGATTTCTCAAACCTCACAACTGAGGAGTGGGTGAGTAGGGTTAATAGTTATCCAGCTCTACATATACCTGATGATGTTCTCATCAATGTCACTGTGAATTGTTCATGCGGTGATAAGCATGTGTCCAAGGATTATGGATTGTTTGCTACGTATCCCCTAAGGTTCGGCGAGGATTTGAAGACGGTGGCGGCGAAATCCGGCGTGCCGGCCGAGTTGCTACAGAGGTACAATCCAGGGGCTGATTTTAGTGCCGGGAATGGGATTGTTTTTGTGCCGGCCAAAGATGAAAATGGAAAGTTTCCACCACTCAAGTTGGGGAATATCAGGTGGAGCCATAGCTGGCATAGTTATTGGAGAAAGAAGGTGGTGGCTGAGGTATCCCTTCTCCCAGTCCCACCAGGTGCATCTCATGATCAATTTGCTCAACTCCAACATGGTTGTTTAGGTGGTGGAAGCAGTTTGGGTAAGGCATCAGAATCTTCCACTACTGTGATTTCTCCAAGGTTGACTGGTATTACAGTGGACAAGTCAGTGGAGTTTTCATATGAAGAACTGGCCAAAGCTACTAATGGCTTTAGCATAGCTAACAAAATTGGCCAAGGTGGTTTTGGTTCTGTATACTATGCAGAGCTTAGAGATGAGAAAGCAGCTATTAAGAGAATGGATATGCAAGCATCAAAAGAATTCCTTGCTGAACTCAAGGTTCTAACACACGTCCATCACTTGAACTTGGTGCGTTTAATAGGATATTGTGTTGAAGGCTCTTTATTTTTGGTTTATGAATACATTGAGAATGGCAATTTAAGTCAACATTTGCGTGTGTCAGGGAGGGATCCATTATCATGGCCTATTAGAGTTCAAATTGCACTTGATTCAGCAAGAGGACTTGAATACATTCATGAGCATACAGTTCCTGTCTATATCCACAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGCGCAAAGGTTGCAGATTTTGGGCTAACAAAATTGACTGAATATGGTAGCTCTTCATTACAAACACGTCTTGTTGGTACATTTGGCTATATGCCTCCAGAATATGCACAGTATGGTGAAGTTTCCCCCAAAATAGATGTATATGCTTTTGGTGTTGTTCTCTATGAACTCATATCCGGAAAGGAAGCTATTATCAAGACAAATGAGATTGTGACTGAATCAAAAGGGCTAGTTGCCTTGTTTGAAGAGGTTCTTAGTCAGGCAGACCCAAAGGAAGATCTTTCTAAATATGTTGACCCTAGACTTGGTGACAACTACCCTATTGACTCTGTATTTAAGATGTGTCAACTTGCAAGAGCTTGCACACATGAAAACCCTCAACTAAGGCCAAGCATGAGATCAATTGTGGTTGCATTGATGACACTTTCATCAGCAACTGAGGATTGGGATGTTGGCTCTTTCTATGAAAATCAAGCTTTGGTGCATCTAATGTCTGGAAGGTAG 1854 0.4207 MTRKPINARKQHHHVLLIDLLILYYFVLFFPAITTKSEARCSSGCDLALASYHLWPGTNLTYIATIFGKPQSEILKYNPGIKNPDSIEDQKRINVPFSCECFNSDFLGHTFSYRTQHGDTYNNIAKHDFSNLTTEEWVSRVNSYPALHIPDDVLINVTVNCSCGDKHVSKDYGLFATYPLRFGEDLKTVAAKSGVPAELLQRYNPGADFSAGNGIVFVPAKDENGKFPPLKLGNIRWSHSWHSYWRKKVVAEVSLLPVPPGASHDQFAQLQHGCLGGGSSLGKASESSTTVISPRLTGITVDKSVEFSYEELAKATNGFSIANKIGQGGFGSVYYAELRDEKAAIKRMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRVSGRDPLSWPIRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELISGKEAIIKTNEIVTESKGLVALFEEVLSQADPKEDLSKYVDPRLGDNYPIDSVFKMCQLARACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241920g00010 617 SMART serkin_6 319 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241920g00010 617 CDD STKc_IRAK 325 586 - -
Stsc241920g00010 617 ProSiteProfiles LysM domain profile. 50 95 IPR018392 -
Stsc241920g00010 617 ProSiteProfiles Protein kinase domain profile. 319 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241920g00010 617 FunFam PTI1-like tyrosine-protein kinase 3 390 603 - -
Stsc241920g00010 617 FunFam LysM receptor kinase 2 298 389 - -
Stsc241920g00010 617 SUPERFAMILY Protein kinase-like (PK-like) 296 589 IPR011009 -
Stsc241920g00010 617 ProSitePatterns Protein kinases ATP-binding region signature. 325 346 IPR017441 GO:0005524
Stsc241920g00010 617 Gene3D Transferase(Phosphotransferase) domain 1 390 607 - -
Stsc241920g00010 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 23 603 IPR044812 GO:0019199|GO:0045087
Stsc241920g00010 617 Pfam Protein tyrosine and serine/threonine kinase 321 588 IPR001245 GO:0004672|GO:0006468
Stsc241920g00010 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Stsc241920g00010 617 Gene3D Phosphorylase Kinase; domain 1 304 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241920g00010 Stsc-Chr241920 38307 42817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241920g00010 22 617 Receptor kinase-like Gene Family AT3G21630 56.619 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc241920g00010 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241920g00010 - K13429 gmx:100802308 895.96