Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241920g00001 ATGGACAAAGGAGGATGGGGTCTCACCCTTGAAACTTGTTCCTCTCCAACCATCCCATTCTTTCATTCTTCTTCTTCTTCTTCCTCCTCCAAGTTGCAGCCACCACCACCACATAACAATAACATGTTTCCGCTCCTGGGATTCCCCGTCAACCTTACTCGCTCCGCCGATGATCATAACAACGATGATAGCAACCGCAAGGTGGTTGTTGACTTTTTCTCCGATAATAGGAACAAGGCACAAGAGCACCAGCATGTTAATAAGCCCAACATCTCCGTCAAGAAGGAGATTCCTCCCCATCATCATGATGATATACCTTCCACCAAAGTTTACACGGGTTTACAACTGCTTACTACCGGCGGCAACAGTGGGAGCGATCAATCTACGGTGGATGATGGAGTATCATCAGATGCTGAAGATAAGAAAGCCAAGGTCACTGAGCTAGCGGTGTTGCAAGTGGAGCTTGAACGCATGAATGCTGAGAATCAAAAGCTGAAAGAGATGCTCAACCACGTCACCGGTAACTACACCGCCTTGCAAATGCATCTTGTCACATTAATGCAACAACAACAACACACTCCCAAAGATGTTGAAGAAAAAGTAGTAGTGGGAGGGGAAGCAAGACAGTTGCTTGATTCAGGAAATAATGATCAAGCATGTGATTCTTCTTCTGATGATGAAAGAACGCGATCCAACACACCCCACGCCCAACTTGGAATCAAGAACGACAGAGAAGACAGTCCAGACTCAGAGTCACAACCTTGGGGTCCCAACAAGCACCAAAAAACCAATACTACTACTTACCCCTCAAGTAGTAACTCGGTGGATCAATCCTCTTCTGAAGCCAGCATGAGAAAAGCCCGTGTCTCAGTCCGTGCCCGCTCAGAAGCTCCCATGATCAGTGATGGCTGCCAGTGGCGAAAATATGGACAAAAGATGGCAAAGGGTAATCCATGTCCTCGAGCTTATTACAGATGCACCATGGCCGTTGGTTGCCCCGTTCGCAAACAAGTTCAACGTTGTGCTGAGGACAGAACTATTTTGGTCACTACATACGAAGGAACACACAGCCATCCGCTGCCACCGGCGGCCATGGCCATGGCATCAACCACCACAGCAGCTGCCACCATGTTACTATCAGGCTCCATGTCAAGTGCAGATGGAATCATGAACCCCAACCTCCTAGCAAGAGCTATTTTCCCATCATGCTCAACTTCTTCTTCTTCAAGCATGGCAACACTCTCAGCTTCAGCACCATTTCCAACTGTCACATTGGACCTCACACAAAACCCCTCAACAACTAATAATGCTAATAGTACTTCCACTCCACCTCAGTTGCAGCCCCAAATGAGGCACCACCCTCTTAATGCTGTCCCCTTGTTCCAGCTGCCTAATTTCCACTCTCAAGCCCTATATAACCAATCAAAATTCTCCGGCCTTCAATTGTCCCAAGAAGCTGCTGCCTCTTCCCAATTGGGAATCCAAGCTCCAAGGCCACCTTTGCACCACAACCAACAACAACCACAACCACCGCCATCGCTGGCTGATTCCGTCACCGCAGCCATCACCACCGATCCTAACTTCACCGCCGTTCTCGCAGCTGCCATCTCCTCCATCATCGGAGGTAATAATAACAATAATAATCAGGCAAACAGCACTGGAGACGGCAACAACAGCAATCCTAGTATGAGCAACAGGACAACAATAAGCAGCTTTTCGGGAAATTAA 1728 0.4809 MDKGGWGLTLETCSSPTIPFFHSSSSSSSSKLQPPPPHNNNMFPLLGFPVNLTRSADDHNNDDSNRKVVVDFFSDNRNKAQEHQHVNKPNISVKKEIPPHHHDDIPSTKVYTGLQLLTTGGNSGSDQSTVDDGVSSDAEDKKAKVTELAVLQVELERMNAENQKLKEMLNHVTGNYTALQMHLVTLMQQQQHTPKDVEEKVVVGGEARQLLDSGNNDQACDSSSDDERTRSNTPHAQLGIKNDREDSPDSESQPWGPNKHQKTNTTTYPSSSNSVDQSSSEASMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHSHPLPPAAMAMASTTTAAATMLLSGSMSSADGIMNPNLLARAIFPSCSTSSSSSMATLSASAPFPTVTLDLTQNPSTTNNANSTSTPPQLQPQMRHHPLNAVPLFQLPNFHSQALYNQSKFSGLQLSQEAAASSQLGIQAPRPPLHHNQQQPQPPPSLADSVTAAITTDPNFTAVLAAAISSIIGGNNNNNNQANSTGDGNNSNPSMSNRTTISSFSGN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 423 449 - -
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 547 575 - -
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 251 285 - -
Stsc241920g00001 575 SUPERFAMILY WRKY DNA-binding domain 293 361 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241920g00001 575 Gene3D WRKY domain 285 362 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc241920g00001 575 ProSiteProfiles WRKY domain profile. 295 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 22 36 - -
Stsc241920g00001 575 FunFam probable WRKY transcription factor 31 285 362 - -
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 79 106 - -
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 495 516 - -
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 207 294 - -
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 22 45 - -
Stsc241920g00001 575 Pfam WRKY DNA -binding domain 302 359 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241920g00001 575 SMART WRKY_cls 300 360 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 119 138 - -
Stsc241920g00001 575 Coils Coil 141 175 - -
Stsc241920g00001 575 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 127 552 IPR044810 GO:0003700
Stsc241920g00001 575 MobiDBLite consensus disorder prediction 423 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241920g00001 Stsc-Chr241920 3631 6100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241920g00001 48 560 WRKY Transcription Factor Family AT1G62300 51.805 1.02e-138 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc241920g00001 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241920g00001 - - gmx:100802124 559.681