Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241917g00003 ATGGCTTCAATGAACTTGCTGGGTTTCTCTCTCTCCCCTCAAGAACAGCAAACTCATCATCATCAAACTCGCTTTGGGTTATTCAATCTTACTACTACTTCTGAAGATGATGTAACTGCTCATGGAAACTGCTTCAATCTCACTACTACTCCTACTCATGCCTCCACTACTCTCAATAATCTCCCTCCTTTTCCCATCTATGAAGAACAGCAACCATTCAACAATCATCTTTCTTCTCACCAAGATTGGAAGGAAAATAATAACAACTACGACAACCAGAACTTGCTATTGGGAACTTCATGCAACAACAACCACCATCACCAACAACCCAAGCTTGAGAACTTCCTCGGAGGAGATTATGGTGCCAACTCATCAGCCTCCGGAGGAGGAGAATACATCTTCCAAAACTGCACAGCAGGTGGCGACCGCGGAGGAGGCGGTGGTGGTGGAAGCACAAACTCAATAGGGTTGTCGATGATAAAGACATGGCTAAGGAACCAGCCACTTCATCATCATCAAAATCACTCATCAGAAAACCAAGAAACTATTATTGCATCTTCAGATAATAATACAACTGCACCAACAACTACGAATAGTGTGCAAACTTTGTCTCTTTCTATGAGTACTGGCTCACTGTTACCACCTACTAATGCTGTTAGTATTGCGGGAGGAGGAGATAGTTATTCTTCATCGGAAATAAACAGCAGCAACAACAAGCAAGTAGTAGAAAATGGTGGGAGTATTGTTGAGAATAACAATAATGGGGCAAAGAAGTCCATTGACACTTTTGGACAAAGAACTTCGATTTACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGATATGAAGCTCATTTATGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGGAGGCAAGGGGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCACTAAAATACTGGGGAACCACAACAACAACAAATTTTCCGATTAGTCAATATGAAAAAGAGTTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTTGCTTCATTGAGAAGGAAGAGTAGTGGATTTTCTCGTGGTGCATCCATTTATCGTGGAGTAACAAGGCATCACCAACATGGTAGATGGCAAGCTCGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTAGGAACTTTTAGCACACAGGAGGAGGCAGCAGAAGCATATGACATAGCAGCAATAAAGTTCAGAGGTTTGAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTGAAGAGCATTCTAGAGAGTAGCACCTTGCCCATTGGTGGTGCTGCCAAGAGGTTGAAGGACATGGACAATAATAATAATGTAGACCTAATAACTAATGTTGATAATGTTCATCAAGATCACAGTAACAGCATCAATTCTCATCATCATTCCCTAACTGATGGAATCAACAACTTTGTAGCCGCCACTACCCATCATGGTTGGCCTGCTACCCTTGCATTCCAACACTACCCTGCTGCTAATTATGGATCATCATCATCTTCATCACAGAGGCTTTGGTGCAAGCAAGAGCAAGATTCTTCTGATCATCACAATTTTCATCAAGAGATTCATCCATTGCAGCTTGGAGGGTTTACCCACAATTTCTTTCAGCATGGTATCATGAGCATGGATCATTCAGCTTCCATGGATAATAACAACAGCTCCGGATCAGGCTCTGTTGTCTATGGTGGTGGTGGGGGTGGTGATGCCAATGGATATGTGTTTCCAATGGGTTCTGTTATTGGCAATGATAGCAGCAATGAAATTAAGGGACTTAGCTATGAAAGTGTTTTTGGTAGCGAGGCATATAATCAAACACATGGAAGGCATTTGTATTATCAGCAACAATCATCAACAGTGGAGCAAAACAATAATGGAGTGGTAGTAGTTAAGGGTAGCCCATATGATCACCATCATCAACATCATGGTGGTTCCAGCAACAATTGGGTTCCAACTGCCATACCCACTATTGCAGCATCAAGGTCTCTCTGCCATGGGGCTCCACCATTCTCATTATTGCATGAATGA 2082 0.4251 MASMNLLGFSLSPQEQQTHHHQTRFGLFNLTTTSEDDVTAHGNCFNLTTTPTHASTTLNNLPPFPIYEEQQPFNNHLSSHQDWKENNNNYDNQNLLLGTSCNNNHHHQQPKLENFLGGDYGANSSASGGGEYIFQNCTAGGDRGGGGGGGSTNSIGLSMIKTWLRNQPLHHHQNHSSENQETIIASSDNNTTAPTTTNSVQTLSLSMSTGSLLPPTNAVSIAGGGDSYSSSEINSSNNKQVVENGGSIVENNNNGAKKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLSAVTNFDMSRYDVKSILESSTLPIGGAAKRLKDMDNNNNVDLITNVDNVHQDHSNSINSHHHSLTDGINNFVAATTHHGWPATLAFQHYPAANYGSSSSSSQRLWCKQEQDSSDHHNFHQEIHPLQLGGFTHNFFQHGIMSMDHSASMDNNNSSGSGSVVYGGGGGGDANGYVFPMGSVIGNDSSNEIKGLSYESVFGSEAYNQTHGRHLYYQQQSSTVEQNNNGVVVVKGSPYDHHHQHHGGSSNNWVPTAIPTIAASRSLCHGAPPFSLLHE 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241917g00003 693 MobiDBLite consensus disorder prediction 1 20 - -
Stsc241917g00003 693 Pfam AP2 domain 368 418 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 Pfam AP2 domain 269 324 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 CDD AP2 268 334 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 FunFam AP2-like ethylene-responsive transcription factor 367 428 - -
Stsc241917g00003 693 PRINTS Ethylene responsive element binding protein signature 408 428 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 ProSiteProfiles AP2/ERF domain profile. 269 332 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 SUPERFAMILY DNA-binding domain 268 334 IPR016177 GO:0003677
Stsc241917g00003 693 ProSiteProfiles AP2/ERF domain profile. 368 426 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 CDD AP2 367 428 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 SMART rav1_2 269 338 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 SMART rav1_2 368 432 IPR001471 GO:0003700|GO:0006355
Stsc241917g00003 693 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 526 - -
Stsc241917g00003 693 SUPERFAMILY DNA-binding domain 367 428 IPR016177 GO:0003677
Stsc241917g00003 693 Gene3D AP2/ERF domain 269 334 IPR036955 GO:0003700|GO:0006355
Stsc241917g00003 693 Gene3D AP2/ERF domain 368 428 IPR036955 GO:0003700|GO:0006355
Stsc241917g00003 693 FunFam AP2-like ethylene-responsive transcription factor ANT 268 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241917g00003 Stsc-Chr241917 13499 17787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241917g00003 110 602 AP2-EREBP Transcription Factor Family AT5G17430 52.286 1.99e-132 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc241917g00003 AP2 3.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241917g00003 K09285 - gmx:100797584 647.891