Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241916g00001 ATGGGATTCAAATTGCCTATTCTTCATAAGAAAACTTCTGTTCCAAAAGGTTATCTTGCTGTTTATGTTGGAGAGAACCAAAAGAAACGATTGGTGATACCTATATCATACTTGAACCATCCTTCAATTCAAGACTTGCTAAGTCAAGTTGAACAAGAATTCGGATTTGACCATCCAATGGGTGGCCTCACAATTCCTTGCAGAGAAGATTGTCTCTATGAGGTTGGACGTGTTCTTGGTGATGCTGAGCTGAAGCAGTTCACTGACAAGAGAGTCAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATTCTGCTGATGACTTCCTAGATGAACTCTCCACTAAAGCCGCCATCGCTGCTGCTCAAGGGGATCCAGGTAACCACTCTTCTTCCTGGTCTCGTCTAGTTGATTCATATATTGAAGATGCTGGTGACTTGGAACACATAGTTGGAAGACTAGACTCTGTTGTAGCACGCAAAAAGATATTGACCTTGAAGCTGGTTAGATGTTCAAAACTAAAAATGCTTCCAGTTGCCATGAAAGATCTTGTAAATTTACGCCATCTTGATATTACAGATACTTATTTGCATGAGATGCCGAAAAGCATGAACAAATTGAAAAAATTGCAGTTTTTAAGTGACTATGTTGTTGGGAAGCGTGAAGAGAATAAGATTAAAGAACTGGGAGCACCTGCAGATCTACACAAATCAATTTACATTCACAACTTGGAGAATGTGGTCAATAGCAATGAAGCGATGGATGCAAGAATGTGTGATAATGATGGCATTGATTCTATGAGGTTGAGTTGGTGGTGGAATGAAGACGAGAATATAGTTGATTTCCAAATAGAAAAAGATATTTTCGACGAGTTAAGACCTCTTAATAATTTGAAAGAACTGGAAATGAGTGGTTACATGGGTACAAGATTTCCAGATTGGTTGGGACATTCTTCCTACCACAACATCACCAACATAACACTGGATGGTTGCAGGAATTGTTGTATGCTTCCTTCACTTGGACAATTTCCCTCTTTGAAGCACCTCAAAATTTCTAAATTTGAAAGGCTTGAGATTGTGGGTGCTGAGTTTTATCAGAAGGATGAATCTTGTTTGAAGACACCATTTCCAATGCTTGAAACTCTTGGGTTTGAGTCAATGCCTTGGTGTTGGTGTTCAAGTGTGAGGGGTTAG 1194 0.3961 MGFKLPILHKKTSVPKGYLAVYVGENQKKRLVIPISYLNHPSIQDLLSQVEQEFGFDHPMGGLTIPCREDCLYEVGRVLGDAELKQFTDKRVKKWLVDLQDALYSADDFLDELSTKAAIAAAQGDPGNHSSSWSRLVDSYIEDAGDLEHIVGRLDSVVARKKILTLKLVRCSKLKMLPVAMKDLVNLRHLDITDTYLHEMPKSMNKLKKLQFLSDYVVGKREENKIKELGAPADLHKSIYIHNLENVVNSNEAMDARMCDNDGIDSMRLSWWWNEDENIVDFQIEKDIFDELRPLNNLKELEMSGYMGTRFPDWLGHSSYHNITNITLDGCRNCCMLPSLGQFPSLKHLKISKFERLEIVGAEFYQKDESCLKTPFPMLETLGFESMPWCWCSSVRG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241916g00001 397 Gene3D - 69 148 - -
Stsc241916g00001 397 Gene3D Ribonuclease Inhibitor 149 395 IPR032675 -
Stsc241916g00001 397 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 75 IPR003676 GO:0009733
Stsc241916g00001 397 Pfam Rx N-terminal domain 74 119 IPR041118 -
Stsc241916g00001 397 SUPERFAMILY L domain-like 160 388 - -
Stsc241916g00001 397 Pfam Auxin responsive protein 10 75 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241916g00001 Stsc-Chr241916 13735 15878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241916g00001 14 68 Calmodulin-binding Proteins AT3G43120 54.545 1.35e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241916g00001 - - ahf:112757511 322.783