Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241915g00001 ATGGCTATGGATTCCTCCAGCTTCAAACAAAACAAGCATTCTCCTTCCAATGTGATCCGTTTCTTCAAGATTATTCTCAGAAAAACTCTTCAAGATGGAAACCTTAAGTTACCAAACAAGTTCACTAACAAATATGGTTCTGGCCTACCAAACCCATTGTATCTTAAGCCTCCAGATGACACTAAATGGAAAGTAGATTGGACTAATCATGATGGTGGAGTTTTGTTTGAAAAGGGTTGGAAAGAGTTTACTGCATATTACTCTCTTGATAATGGCCATTTGTTGTTCTTTGAGTATAATGAAACTTCTCACATTGAAGTACACATACATGACATAAGTGGCCTTGAAATAGACTATCCTGCAATTCCTGCCAACGACCAGATCAAAGAGCAGCTGTCACGACGCAGGGGCCAGCCATGCAATTGTCTGAAAGAACCAATTTCATCATCCCCTTCTATAAGTAAACAATTGAGAAGTGCCACAACAACTAGAGATGTGGATAGCAGTCCCAACACCCAAAACATGAGACTTAATGAGGGCCGACCGAGGAAAAGATTGAAAGCACTGATGTCATCTCCTTCTAAATGTAAAAAGAATAGAAGAAGACAAGATTCTAAATCTTCTGTTAGGCCCTGCCCTGCAAGACCTGAATCTCTGAAAGAAGGTAAGAAGTTCAAGTGGAAAAATCCCTCTTTCATCATCAACATAACGCAACGGACTCAATCAAGTTCACCATCTTACTTTTCATATAAATTCTTCGAAAAGTATTTTAAAAATAGTCCACAGGATGCAAACATAAGGTTTGGAAAGGAGGTGTTCCCTGCTAAGTTGTTATATAGGCCATCAACTTTTAATGCCTCTATCTCTGCTGGTTGGAGCCTTTTTGCTAAAGCTAGTAAATTACAAGTTGGAGATGTTTGTATGTTTGAGCTCACCGATAGAAAAGATGCAGTGCATGATGTTCGTATCTGTCGTCGACAAGGCCGCGAGTCATGTTCCAAACCTGTGACTCATGGGATTCAGCTCCTGAAAAAAGCTAAGGAGTTCAACTCAGAAAATCCTACTTTCATGGTCAAGATAAAGAGAAGCGATCCAAGGAAATCAAGGCCTATAAGTTCAATTTGA 1125 0.3964 MAMDSSSFKQNKHSPSNVIRFFKIILRKTLQDGNLKLPNKFTNKYGSGLPNPLYLKPPDDTKWKVDWTNHDGGVLFEKGWKEFTAYYSLDNGHLLFFEYNETSHIEVHIHDISGLEIDYPAIPANDQIKEQLSRRRGQPCNCLKEPISSSPSISKQLRSATTTRDVDSSPNTQNMRLNEGRPRKRLKALMSSPSKCKKNRRRQDSKSSVRPCPARPESLKEGKKFKWKNPSFIINITQRTQSSSPSYFSYKFFEKYFKNSPQDANIRFGKEVFPAKLLYRPSTFNASISAGWSLFAKASKLQVGDVCMFELTDRKDAVHDVRICRRQGRESCSKPVTHGIQLLKKAKEFNSENPTFMVKIKRSDPRKSRPISSI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241915g00001 374 SUPERFAMILY DNA-binding pseudobarrel domain 226 326 IPR015300 -
Stsc241915g00001 374 CDD B3_DNA 20 111 IPR003340 GO:0003677
Stsc241915g00001 374 SMART B3_2 21 113 IPR003340 GO:0003677
Stsc241915g00001 374 SMART B3_2 232 327 IPR003340 GO:0003677
Stsc241915g00001 374 MobiDBLite consensus disorder prediction 143 177 - -
Stsc241915g00001 374 Gene3D - 14 114 IPR015300 -
Stsc241915g00001 374 Pfam B3 DNA binding domain 243 326 IPR003340 GO:0003677
Stsc241915g00001 374 Pfam B3 DNA binding domain 28 110 IPR003340 GO:0003677
Stsc241915g00001 374 PANTHER B3 DOMAIN-CONTAINING 11 316 - -
Stsc241915g00001 374 CDD B3_DNA 230 325 IPR003340 GO:0003677
Stsc241915g00001 374 MobiDBLite consensus disorder prediction 188 204 - -
Stsc241915g00001 374 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
Stsc241915g00001 374 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Stsc241915g00001 374 Gene3D - 214 328 IPR015300 -
Stsc241915g00001 374 ProSiteProfiles B3 DNA-binding domain profile. 288 327 IPR003340 GO:0003677
Stsc241915g00001 374 MobiDBLite consensus disorder prediction 132 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241915g00001 Stsc-Chr241915 477 3872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241915g00001 21 325 B3 DNA Binding Superfamily AT3G18990 26.727 1.23e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc241915g00001 B3 6.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241915g00001 - - adu:107471893 397.512