Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241912g00007 ATGATGCAGCAGCAGATGCTTCCAAGGGGACGAGGCTATCGTTATCCAGGTGGTCGCAACATGCAGGATGTTCCAATGCTTGCAGTCAACTATGACATGGGAGCCCTACCCATCCGGGATTCGATGGGACAACCAATGCCCATTCAAGCCTTGGCTACAGCCCTTGCAAATGCTCCTCCAGGACAGCAGAGGACTATGCTTGGTGAAGCTTTATATCCGCTTGTTGATAAGCTGGAACATGATGCAGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTGATTGAGTCACCGGATGCTCTCAAGGCAAAAGTTGCCGAGGCCATGGATGTCTTGAAAAATGTTGCTCAGCAGCAAACCAATGCCCCAGCTGATCAACTCGCATCCCTCTCTCTGAATGAAAATCTTGTCTCTTAG 438 0.4977 MMQQQMLPRGRGYRYPGGRNMQDVPMLAVNYDMGALPIRDSMGQPMPIQALATALANAPPGQQRTMLGEALYPLVDKLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLKNVAQQQTNAPADQLASLSLNENLVS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241912g00007 145 SMART poly_2 59 122 IPR002004 GO:0003723
Stsc241912g00007 145 SUPERFAMILY PABC (PABP) domain 1 136 IPR036053 GO:0003723
Stsc241912g00007 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 61 131 - -
Stsc241912g00007 145 Gene3D - 43 126 - -
Stsc241912g00007 145 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 47 124 IPR002004 GO:0003723
Stsc241912g00007 145 FunFam Polyadenylate-binding protein 43 125 - -
Stsc241912g00007 145 Pfam Poly-adenylate binding protein, unique domain 55 119 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241912g00007 Stsc-Chr241912 46413 47065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241912g00007 2 143 Eukaryotic Initiation Factors Gene Family AT2G23350 60.645 8.02e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241912g00007 K13126 - gmx:100784442 238.424