Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241912g00006 ATGGCGCAAGTTCAGGTTAGCCCCAATGCGAACGGTGATGCCGCCGCCGCCGCCGCTTTTGTCCCGAACCAGTCAGTGATGACGTCACTTTACGTTGGGGATCTCGACCGCAACGTCAAGGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGTCAGGTCGTCTCTGCTCGCGTCTGCAGGGACTTGGCCACCCAGCAATCCCTCGGTTACGGTTACGTCAATTTCAGTAACCCTCAAGATGCGGCGAGAGCATTGGATGTGCTGAATTTCACTCCGCTGAACAACAAACCTATTAGGATCATGTATTCTCATCGCGACCCTAGCTCCCGCACTAGCGGCGCTGCTAATATTTTTATCAAGAATTTGGATAAGTCGATTGATCATAAGGCTTTGCATGATACTTTTTCCTCTTTTGGGTCTATTCTTTCCTGCAAGATAGCCACAGATCCTTCTGGCCAGTCCAAGGGATTTGGCTTTGTGCAATTTGAGAAGGAAGAGTCTGCTCAAAATGCCATTGACAAGTTGAACGGAATGCTGATAAATGACAAACAGGTTTATGTGGGGCATTTTCAAAGAAAGCAGGATAGGGAGAGTGTCTTAAGCGCCAATACAAAATTTAGTAATGTTTATGTAAAGAACCTGTCTGAGTCCATGTCGGATGATGACTTGAAGAAAACTTTTGGGGAGTATGGGACAATTACTAGTGCTGTAGTGATGAGAGATTTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTCGAAAATGCTGATGATGCTGCTAAAGCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGATAAGGAGTGGTATGTGGGGAAAGCCCAGAAGAAATCTGAAAGGGAGCTTGCGCTGAAAGAGCGATTTGAGCAGAGTATGAAGGAAGCTGCGGACAAATATCAAGGTGCTAACTTGTATCTCAAAAACTTGGATGATAGCATTGATGATGTAAAGCTCCGTGAACTCTTCTCCGAGTTTGGTACAATAACTTCATGCAAGGTTATGCGTGATCCACATGGAATCAGTAGAGGATCTGGATTTGTTGCATTTTCATCTCCTGAGGAAGCTACTCGAGCTCTCGGAGAAATGAAAGGGAAATTGATTTCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAGGAGGAAAGAAGAGCCAAGTTGCAGGCACAATTTTCACAAATGCCACATGTATCAATGTCTCCTTCTGTTGCACCTCATCTCCCACTCTATCCTCCAAGGGCCATGGGTATTGGACATCCATTTTTGTATGGGCAGGCACCTCCAGCTGTCATTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTGCCTGGAATGAGGCCAGGTGCTCCAATGCCAAGCTTCTTTGTTCCAGTGGTTCAGCAGGGTCAACAAGGGCAGCGCCCCGGTGGTCGTCGAGGAACAGGTCCTGTGCAACAACCGTAG 1473 0.465 MAQVQVSPNANGDAAAAAAFVPNQSVMTSLYVGDLDRNVKDPQLYDLFNQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSSRTSGAANIFIKNLDKSIDHKALHDTFSSFGSILSCKIATDPSGQSKGFGFVQFEKEESAQNAIDKLNGMLINDKQVYVGHFQRKQDRESVLSANTKFSNVYVKNLSESMSDDDLKKTFGEYGTITSAVVMRDLDGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELALKERFEQSMKEAADKYQGANLYLKNLDDSIDDVKLRELFSEFGTITSCKVMRDPHGISRGSGFVAFSSPEEATRALGEMKGKLISGKPLYVALAQRKEERRAKLQAQFSQMPHVSMSPSVAPHLPLYPPRAMGIGHPFLYGQAPPAVIPQAGFGYQQQLVPGMRPGAPMPSFFVPVVQQGQQGQRPGGRRGTGPVQQP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241912g00006 490 PANTHER RNA BINDING PROTEIN 23 90 - -
Stsc241912g00006 490 Gene3D - 205 307 IPR012677 -
Stsc241912g00006 490 Gene3D - 15 116 IPR012677 -
Stsc241912g00006 490 SMART rrm2_1 117 189 IPR003954 GO:0003676
Stsc241912g00006 490 SMART rrm2_1 312 384 IPR003954 GO:0003676
Stsc241912g00006 490 SMART rrm2_1 209 281 IPR003954 GO:0003676
Stsc241912g00006 490 SMART rrm1_1 29 102 IPR000504 GO:0003723
Stsc241912g00006 490 SMART rrm1_1 117 189 IPR000504 GO:0003723
Stsc241912g00006 490 SMART rrm1_1 209 281 IPR000504 GO:0003723
Stsc241912g00006 490 SMART rrm1_1 312 384 IPR000504 GO:0003723
Stsc241912g00006 490 Gene3D - 117 204 IPR012677 -
Stsc241912g00006 490 FunFam Polyadenylate-binding protein 117 190 - -
Stsc241912g00006 490 FunFam Polyadenylate-binding protein 14 116 - -
Stsc241912g00006 490 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Stsc241912g00006 490 MobiDBLite consensus disorder prediction 470 490 - -
Stsc241912g00006 490 FunFam Polyadenylate-binding protein 294 399 - -
Stsc241912g00006 490 CDD RRM3_I_PABPs 207 286 - -
Stsc241912g00006 490 FunFam Polyadenylate-binding protein 200 293 - -
Stsc241912g00006 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Stsc241912g00006 490 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 29 481 IPR006515 GO:0003723
Stsc241912g00006 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Stsc241912g00006 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Stsc241912g00006 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Stsc241912g00006 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Stsc241912g00006 490 CDD RRM2_I_PABPs 114 190 IPR045305 -
Stsc241912g00006 490 CDD RRM1_I_PABPs 29 108 IPR034364 -
Stsc241912g00006 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Stsc241912g00006 490 CDD RRM4_I_PABPs 310 388 - -
Stsc241912g00006 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Stsc241912g00006 490 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Stsc241912g00006 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Stsc241912g00006 490 Gene3D - 308 409 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241912g00006 Stsc-Chr241912 43885 46400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241912g00006 1 469 Eukaryotic Initiation Factors Gene Family AT4G34110 68.685 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241912g00006 K13126 - csin:114281995 741.11