Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241912g00005 ATGGGAAGCATGAGCATGAAGGTACATCATTTGGCACGTGCACTGGAACCCTCCCTCTCCTTCAATGCCTGCACCAAGCGCTTTCGCCCTCTTGCCCCTAAGCTCGACACCACCACCACCACCCCTTCTTTTTCTACCGCCTTTGACCTCAAGAGCTTCATAAGACCAGAGAGTAATAATGCCCCAAGAAAAGCGGTCACCTCCGACGAGGACAACATTAAGAAAGACCCACCTTATCCAGGAGGGACGCGGTGGAACCCGACGCAAGAACAGATAGGGATACTGGAGATGCTTTATAGAGGCGGGATGCGAACTCCCAACGCTCAACAGATAGAACAAATCACTGCACAGCTTTCCAAGTACGGCAAGATCGAAGGCAAGAACGTCTTCTATTGGTTCCAAAACCACAAAGCACGCGAAAGGCAAAAGCTCAAGCGCACCAACAACGCTACCGATACTCCCACCTCCAAGAAGAAGTGTACATCATGGAACTTTGATGATCACTGCTTCCAGTTACAACGCACCATCAACAACAACAACAATAAGTTTTCATTTTCATCATCGTCGTGTAAAGAGGACGAAAATAGAATAACTACCCTAGAGCTTTTCCCATTGCACCCTGAAGGAGGAAGATGA 636 0.4843 MGSMSMKVHHLARALEPSLSFNACTKRFRPLAPKLDTTTTTPSFSTAFDLKSFIRPESNNAPRKAVTSDEDNIKKDPPYPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKLKRTNNATDTPTSKKKCTSWNFDDHCFQLQRTINNNNNKFSFSSSSCKEDENRITTLELFPLHPEGGR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241912g00005 211 MobiDBLite consensus disorder prediction 55 87 - -
Stsc241912g00005 211 PANTHER WUSCHEL-RELATED HOMEOBOX 4 6 209 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Stsc241912g00005 211 ProSiteProfiles 'Homeobox' domain profile. 88 143 IPR001356 GO:0003677
Stsc241912g00005 211 CDD homeodomain 83 143 IPR001356 GO:0003677
Stsc241912g00005 211 SMART HOX_1 80 147 IPR001356 GO:0003677
Stsc241912g00005 211 FunFam WUSCHEL-related homeobox 4 82 149 - -
Stsc241912g00005 211 SUPERFAMILY Homeodomain-like 81 146 IPR009057 -
Stsc241912g00005 211 Gene3D - 65 160 - -
Stsc241912g00005 211 Pfam Homeodomain 83 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241912g00005 Stsc-Chr241912 40539 41468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241912g00005 6 148 Wox Gene Family AT1G46480 58.385 3.21e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc241912g00005 Homeodomain 4.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241912g00005 - - pop:18104861 219.164