Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241912g00003 ATGGAAGAAGAAAGAGACTGTTGCTCCACCAATAATTCCACCACGACGACGAGAACCAAAGGCAGAAGAAGCAGCAGCAACAGCTCTTCGGAGAAACGCAAACAGCATCAACAGCAACAGCAAGAAGAGAAGCCGTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCGAACAAGAGGTCAAGGATATGGCTGGGTTCATACACAACACCGATAGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTACCTGAGAGGCCCGTCCGCGCGCCTCAACTTCCCTGACTTGCTCTTCCAAGAGCAAAACGGCGAAGCCGTTGAAGAAGGAGACATAACCGCCGATTCCATACGCAGAAGAGCCACACAGGTTGGTGCTAGAGTGGACGCTGCTCTTCAGGCTTCATCAAACTCCGCTAATTCCACCCATCAAAACAATTCTGAAAAGCCAGACTTGAACGAGTTTCCGAAACCCGAAGAAACTGAAGAAGATTCTCTTGACCATCAAGATTAA 534 0.5094 MEEERDCCSTNNSTTTTRTKGRRSSSNSSSEKRKQHQQQQQEEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQEQNGEAVEEGDITADSIRRRATQVGARVDAALQASSNSANSTHQNNSEKPDLNEFPKPEETEEDSLDHQD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241912g00003 177 Pfam AP2 domain 46 94 IPR001471 GO:0003700|GO:0006355
Stsc241912g00003 177 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Stsc241912g00003 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 25 169 - -
Stsc241912g00003 177 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
Stsc241912g00003 177 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Stsc241912g00003 177 MobiDBLite consensus disorder prediction 137 177 - -
Stsc241912g00003 177 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Stsc241912g00003 177 MobiDBLite consensus disorder prediction 25 48 - -
Stsc241912g00003 177 MobiDBLite consensus disorder prediction 137 156 - -
Stsc241912g00003 177 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Stsc241912g00003 177 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Stsc241912g00003 177 MobiDBLite consensus disorder prediction 1 48 - -
Stsc241912g00003 177 MobiDBLite consensus disorder prediction 157 177 - -
Stsc241912g00003 177 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Stsc241912g00003 177 MobiDBLite consensus disorder prediction 8 24 - -
Stsc241912g00003 177 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241912g00003 Stsc-Chr241912 26916 27449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241912g00003 30 153 AP2-EREBP Transcription Factor Family AT1G46768 63.910 1.00e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241912g00003 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241912g00003 K09286 - gmx:100801528 202.601