Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241911g00006 ATGATACCCACTTCACCGTGGTATTACTTGTACGATACGATTTTGTACGAAGCGTGTCTATGTGTATGGCTGATATCTTATTATGAGCCAGCAATTGAATATTTAGCTACTTCAAGGGCCCTTCCACGACTTATTGATGTTGTTAAGACTTCTACAAAAGAGAAGGTTGTTAGAGTGGTGGTTTTAACCCTTAGAAATTTGCTGTCAAAAGGGAGTTTGGGTGCTCAAATGGTTGATTTTCAACTGCCACAAGTTGTTCAAAGTTTGAAAGCCCAAGCTTGGAGTGATAAGGACTTGTTGGAGGCGTTGAGTTCTCTTGAAGAAGGGCTTAAGGACAACATTAAGAAACTTAGTTCTTTTGATAAGTACAAGCAAGAAGTAGTGCTTGGTCATCTAGATTGGTCTCCGATGCACAAAGATCCAATGTTTTGGCTAGAAAATATTAATCACTTTGAAGAAAATGACTTCCAGATTCTAAGGGTACTAGTTACAATTCTTGATACGTCTAGTGATCCAAGAACTCTAGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAACACCATCCTTCTGGTCGGATCATTGTGGCAGACCTTAAAGCCAAGGAGCGAGTTATGAGACTAATGAATCATGAGAATGCCGAGGTTACCAAAAATGCACTTCTTTGCATCCAACGACTTTTCTTAGGTGCAAAATATGCAAGCTATTTGCAAGCTTAA 720 0.3944 MIPTSPWYYLYDTILYEACLCVWLISYYEPAIEYLATSRALPRLIDVVKTSTKEKVVRVVVLTLRNLLSKGSLGAQMVDFQLPQVVQSLKAQAWSDKDLLEALSSLEEGLKDNIKKLSSFDKYKQEVVLGHLDWSPMHKDPMFWLENINHFEENDFQILRVLVTILDTSSDPRTLAVACFDISQFIQHHPSGRIIVADLKAKERVMRLMNHENAEVTKNALLCIQRLFLGAKYASYLQA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241911g00006 239 Pfam V-ATPase subunit H 14 110 IPR004908 GO:0000221|GO:0046961|GO:1902600
Stsc241911g00006 239 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 14 238 IPR004908 GO:0000221|GO:0046961|GO:1902600
Stsc241911g00006 239 FunFam V-type proton ATPase subunit H 130 231 - -
Stsc241911g00006 239 Pfam V-ATPase subunit H 116 228 IPR011987 GO:0000221|GO:1902600
Stsc241911g00006 239 Gene3D - 130 231 IPR038497 -
Stsc241911g00006 239 Gene3D - 13 118 IPR011989 -
Stsc241911g00006 239 SMART arm_5 189 229 IPR000225 GO:0005515
Stsc241911g00006 239 SMART arm_5 28 69 IPR000225 GO:0005515
Stsc241911g00006 239 SUPERFAMILY ARM repeat 14 229 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241911g00006 Stsc-Chr241911 30059 34339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241911g00006 14 239 Primary Pumps ATPases(2) AT3G42050 79.204 6.10e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241911g00006 K02144 - qsa:O6P43_024716 377.481