Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241910g00011 ATGGAAACGACGTCGCAGGCAGACCTCCACCAACCACCGCTCAATCCCCCCGTCGAGAACGGCGGACCTCGGGAATCGAACCATGACGACCGCTGCGCCAAGAAGCCCAAGCTCGACGGTGGTGAAGGAGGAGGAGGAGGGGAATTGAAGAGAGTGGCGGAGATTGTGCTTGTTTTGTCGACCATGGCGACGATGCGGGCGGGTCGAAAACCTACCGACGTGGAGGTGGAGCTTATGAAGGAGGCTCGGAGCAAGCTCGCCGAGCTCTGCGTAGGGCTCGCGCCGAAGGATATCGTTGCGAGGGAAGCGATTGGGACGGTGATTGAGGATCTTGGATTGAACGGCAAGGTTAAGGATCAGAGGTTAGGGTTTCGAACTCCAAAGATGTCAATTGCTGAGAGGTATACGCATGCTAAGTGGAAGATGGAAGAAGCAAAGAAGTTTGCTGCACCTTCTACAACTTATACATCTCAGCCCGTCCAACCAAGTACCAGTGTAACAGCTGACAACCGTGTGCCCCCTCATGGTGTTCGTGTGTTTGCACCTGATAAATCAAGCCACATTGCGATTCCTTCTTCAGCAACAACGGTGTCTATTCCTGCTCATGTTTCTGCAGGATCGTCTGCTGTGCCACAATATCAGTCGACTAGCAATGAAGTAAGACCACCTATGGTTTCTGGTGCAATGGCTAGCACTCACCTCGGCAGAAATTCATCTCCGACGGTAGTGCCTAAACTTGAACACCCACAGGTCAAAGCTGATGGAGGATCAAATGGGTCTTCTTACATGCTTAATGTACCAGCAAATTCTTCAGCAAACCAACCTTTTGCAAGTGCTCCACCATGGTCAATACAGACTCAATCTGCATCATTAGCTAGAAGTGCATTGGAAAACAAGGTGCCTGCTCATAACCCTGTGAAGGTACAAGGAACAAGTGATGTAGCTGCTTCAAGGGCAGGTTCACAAATAACAACAGATCAGAGCTTTAGGCCATTTATTACTCAGACAGCACCTGTAAACTTGTCTAGTATGCAACCATCTTTCCAGGGTACGAACATTGCTCAGCCTCCTTCAATTCCTAGTCATGCGGAAGTTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCATCCTGAACATCCGACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGGTGTGTGAACTCACTGTCAATGAGGTTGATACTGTGCTTCTCTGTGATGCCTGTGAAAAGGGATATCACTTGAAGTGCCTGCAGCCATCGATTTTAAGAGGAATTCATAATAGAGTGGATTGGCATTGCATGAGGTGTTTGAGTTTAAGCGGCGGAAAGCCTTTACCTCCAAAATATGGTCGTGTCATGAGATCATCCAACACTCCGCCTAAATTGCCTGCTAATACGGTTGGAGTTCAACAACCTTCTGAGAAGAAAACAGGGAGCTTAGATACAAAGATCAGCCAGCAGAATATAACAACAAATGGGAGCACTGTTCCAATAGTTGCTACCAGCAACGTCAAAGTTGAGCCTCCATCTGATTCAAAGACTCCTGGTACAAAAGATGTACAGGGTACTGGATCATCCGACACAGAACATATTGATCAGAAGCCTGATCCAAACATCTCTATGAAATCCCTCAATGCAGCTTCTGTTCCTTCCGTTGACTTTCCTGGTGAAAGTTCTGCTCAACAAGTTAATCCTGAGCCTCCAACCTGTAAAGAGACTTCAACATCCAAAGAGTGTTTAGATTCCAAGAGCATTCCTAAATTATCTGAGACAGGTAAATGTGACAATTTGCAATCATCACAAGACTTCCAAGCTGAGCAGAAAGTGGTACAGGGGAATGCTGTAGTATTATCAGATAAAAATGTTGACAGTAGTTTAATGACTAAGGAACAAAAGGAATCCCACTCAGGAGAAGGCTTAACTTATGACACCAAGCGAGATGGCCAAGATGTTGCACTAGCAAACTTTGATGGGAGTTCTGGAACTAATACTGAAGTTAGACAAAATTCTGTGTTATCTTCAGATAGCTCACAAGCTGTAGAATGGATTGGTGATGTTATACAAGAAGTTGATGAGAAAAAGTTTTACCAATCTTGCTGTGTTGATGGGGTAACCTATAGGCTTCATAGTCATGCTCTTCTCCCATCTGGCCATGGCAAATTAGCACCTTCTAAAATTCAGTCTATGTGGGAAGATTGTATAACTGGGTTAAAGTGGGTTAAGGTGACGAAATGCTACTTTCCTGATGATTTGCCTGGGAACATTGGTCATCCATGTATATCCGAAGTTAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTGTTCGAGGTCCATGTGAAGTCCTTCCATCTGATAAATTTAACCAAGAAAATGACATACGAAATCAGTTAGGAATTGAGGCAAGTGGTAGAATCCAGCCACTTTTTGTTTGCAGGTGGTTTTATGATGAAATTAAGAAGTTATTTCAGCCTGTTACTAGTTGA 2523 0.4479 METTSQADLHQPPLNPPVENGGPRESNHDDRCAKKPKLDGGEGGGGGELKRVAEIVLVLSTMATMRAGRKPTDVEVELMKEARSKLAELCVGLAPKDIVAREAIGTVIEDLGLNGKVKDQRLGFRTPKMSIAERYTHAKWKMEEAKKFAAPSTTYTSQPVQPSTSVTADNRVPPHGVRVFAPDKSSHIAIPSSATTVSIPAHVSAGSSAVPQYQSTSNEVRPPMVSGAMASTHLGRNSSPTVVPKLEHPQVKADGGSNGSSYMLNVPANSSANQPFASAPPWSIQTQSASLARSALENKVPAHNPVKVQGTSDVAASRAGSQITTDQSFRPFITQTAPVNLSSMQPSFQGTNIAQPPSIPSHAEVAKIVQKLLQPKHPEHPTWTPPSRDYMNKALTCQVCELTVNEVDTVLLCDACEKGYHLKCLQPSILRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPANTVGVQQPSEKKTGSLDTKISQQNITTNGSTVPIVATSNVKVEPPSDSKTPGTKDVQGTGSSDTEHIDQKPDPNISMKSLNAASVPSVDFPGESSAQQVNPEPPTCKETSTSKECLDSKSIPKLSETGKCDNLQSSQDFQAEQKVVQGNAVVLSDKNVDSSLMTKEQKESHSGEGLTYDTKRDGQDVALANFDGSSGTNTEVRQNSVLSSDSSQAVEWIGDVIQEVDEKKFYQSCCVDGVTYRLHSHALLPSGHGKLAPSKIQSMWEDCITGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSVRGPCEVLPSDKFNQENDIRNQLGIEASGRIQPLFVCRWFYDEIKKLFQPVTS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 23 38 - -
Stsc241910g00011 840 SMART PHD_3 396 445 IPR001965 -
Stsc241910g00011 840 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 839 - -
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 466 536 - -
Stsc241910g00011 840 ProSitePatterns Zinc finger PHD-type signature. 397 444 IPR019786 -
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 152 170 - -
Stsc241910g00011 840 Pfam PHD-finger 397 445 IPR019787 -
Stsc241910g00011 840 Gene3D - 325 447 - -
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 1 46 - -
Stsc241910g00011 840 SUPERFAMILY FYVE/PHD zinc finger 387 452 IPR011011 -
Stsc241910g00011 840 ProSiteProfiles Zinc finger PHD-type profile. 394 447 IPR019787 -
Stsc241910g00011 840 CDD BAH 711 839 - -
Stsc241910g00011 840 ProSiteProfiles BAH domain profile. 712 839 IPR001025 GO:0003682
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 462 585 - -
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 152 174 - -
Stsc241910g00011 840 Gene3D - 681 840 IPR043151 -
Stsc241910g00011 840 MobiDBLite consensus disorder prediction 546 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241910g00011 Stsc-Chr241910 30862 36141 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc241910g00011 PHD 9.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241910g00011 - - aip:107609239 1515.75