Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241910g00007 ATGGCGTCTGCTTCAGAATCATGGATGAAGGAATACAATGAAGCAGTGAAACTTAGTGATGATATTACTGCCATGATGTCTGGCCGGAACTCGGTTTCTTCCGGGCCGGAAACCCAGCGTCACACATCTGCTATAAGAAGGAAGATTACAATATTGGGGACCAGACTTGATAGCTTGCAATCACTTTTGTCTAAGCTTCCTGCTAAACAATTTGTATCTGAGAAGGAGATGAATCGCCGCAAGGACATGCTTGCAAATTTGAGATCTAAAGTTAACCAAATGGCTTCCACTTTGAACATGTCAAACTTTGAAAATAGGGATCGTTTGCTTGGGACCGAAACAAAGCCAGATGACATGAGCAGAACAACTGGCCTGGACAACAACCAACTTGTTGGACTTCAACGGCAAATTATGAAAGAACAAGACCATGGCCTTTCAAAATTGGAGGAGACTGTACTAAGCACAAAACATATTGCACTTGCTGTCAATGAAGAGTTGGATCTACACACTAGACTCATTGATGACTTGGACCAACAAGTAGACGTTACAAATTCTCGGATGAGGGTAACACTCATTACTTTTTTTTCGGACTTCAGACCAAATGTTTTGTCTACCCAAAGCAAAACTACGTTAATTTTGTTTTCTTCGCTCTCTTACAACTCGTTTTTTGTTTTTGTTCTGAAAACAGTGGGTGCACAAGAAATTGACAGTTCTAAATAA 720 0.4056 MASASESWMKEYNEAVKLSDDITAMMSGRNSVSSGPETQRHTSAIRRKITILGTRLDSLQSLLSKLPAKQFVSEKEMNRRKDMLANLRSKVNQMASTLNMSNFENRDRLLGTETKPDDMSRTTGLDNNQLVGLQRQIMKEQDHGLSKLEETVLSTKHIALAVNEELDLHTRLIDDLDQQVDVTNSRMRVTLITFFSDFRPNVLSTQSKTTLILFSSLSYNSFFVFVLKTVGAQEIDSSK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241910g00007 239 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 135 188 IPR000727 -
Stsc241910g00007 239 FunFam syntaxin-51 isoform X2 137 193 - -
Stsc241910g00007 239 CDD SNARE_Qc 138 190 - -
Stsc241910g00007 239 SUPERFAMILY SNARE fusion complex 126 190 - -
Stsc241910g00007 239 PANTHER SYNTAXIN 37 188 IPR045242 -
Stsc241910g00007 239 Gene3D - 137 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241910g00007 Stsc-Chr241910 19245 21305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241910g00007 1 188 SNARE and Associated Proteins AT1G79590 71.053 3.33e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241910g00007 K08503 - gmx:100782666 294.278