Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241909g00006 ATGGACAGAGGCGGTTACAATCAGAAACGTGGTGGTTATGCCAGAGGCGATGGAGGCCATGGCAGAGCAAGAGGAAGAGGAAGAGACTTTCACCAACCCCCACGGCAACCGGCTGACTCCGCCAGAGGAAGAGGCACCGCTGGCAGAGGGCAACCAACACCACCACAACCACAGTGGCTACCAAGGCAGCGGAACACCACCGCCGGGGGAACCACAACCACAACCGGCAGCGGAACCGCACCTCCAAATCCCAATCCCATTCCCCTTCCTTCGAACCCTCATCCTCCCTCTCAACAAGTTGTTCCGGTTCCCGGAATGGGAACGTCATCAGACTCCGCTAAAATGATCTCACCCATTCGGAGGCCTGATTCCGGTGGCAGGGTGGCAGTTCGGACCAAGCCACTCCACGTGAACCATTTTCCGGTGAAATTCAACCCGAAGAGCCGTATCATGCACTACAATGTCGACGTGGGTCCCCAATCGCCGCCGCAACCGGGCCGCCCGCCGAAGAGGATATCGAAGACCGAACTGGCCATGATCCGTGACAAGTTGTTCCTCGACCATCCGGATAGCCTGCCGCTGGGGATGACCGCCTACGACGGCGAGAAGAACATCTTCAGCAAGGTTCCTCTGCCGGAAGAGCCTTTCGCGGTGGAGGTGTCCAAGGGAGAGGATGACAGGCCCACGGGATACGTCGTGACGTTGACTCTGGTCAACGTTCTTGAGATGAGTAAGTTGGAGGATTACATCAGAGGCAGGGCATTGTCAATCCCCAGGGTGATCTTGCAGGGTGTGGATGTGGTCTTCAAGGAGAATCCAATCAAATGCACGGTTCCAATTGGGGGCTGCTTCTACCCGATGAACCCTAAGTTTAGAGAGACGAATCTTCAGCCTGGTGTGATTGCTGTTGGAGGGTTTCAGCATACTCTAAAACCAACCCGTCAGGGACTCTCATTGTGCTTGGATTATTCAGTTTTGTCTTTCAAGAAAAAGATGCCGGTATTGGATTTCCTTCATGAACAGATTCATGGTTTCAATTTGCGGGAATTCAGGAGGTTTAGGAAACAGGTTGAGAGTGTGCTGATTGGTCTGAAGGTTCATGTCACCCACCGGAGGACCAAACAGAAGTACACTGTTTCGTGTCTAACTCCCAAGGACACGCGGCAAATCACCTTCCCCGCCATGGATGCGCAGGGGAACCCAGCTGGGCAGCTTAGCCTAGTTGGATATTTTTTGGATAGGTATCAGATTGACATTAGGTACAAGGACATCCCTGCATTGGATTTTGGAGGCAACAAGACCAACTATGTGCCAATGGAACTTTGTGTTTTGGTTGAGGGTCAGAGGTATCCTAAAGATCAATTGGACAAGTATGCGGCGAGGTCTCTGAAAGAGATGTCCCTGCCTCCACCGAGAGTCAGGCAAGCTGCAATACAGGAGATGGTGAATTCAAGCTGTGGACCCTGTGGGGGTGGTATCGTTGAGAATTTTGAAATGAATGTTAGCACTTCCATGACAACTGTGACTGGGCGTGTAATTGGACCCCCAAAACTGAAGCTTAGCGATCCAAATGGCAGGACTATCCCTATGGCATTGACTCCAGAGAAGTGCCAATGGAATTTGGTTGAAAAGTCAATGGTTGATGGTAAGGCGGTTGAATGTTGGGGCATTCTTGATTTTACCATGGGCAGCGACTGTGTATTTAGCAGTTACAGATTCGTTTCTAAGCTTATTGAGAAGTACAATAAATTTGGCATCACCATGAAGGAGCCAGTTTGCACAGAAAAAACAAACATGTGGAAACTTGGAAATTATAACCAATTATCTGAATTACTTGAAAAGATTAATGATGGGGTTTTCAGAAGACATAGACGCAGGTTACAATTTCTTCTTTGTGTTATGGCCTCCAAAGATCAAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTCGGCATTGTAACACAGTGCTGCTTGTCGGGTAACGCTAATATTGCGAAAGATCAATATCTCACTAATCTTGCTCTCAAGATCAATGCCAAAATTGGGGGCAGTAATGTAGAGCTTGTTAATAGGCTTCCTCATTTTGAGGGCGATGGTCATGTTATGTTTATTGGGGCTGATGTAAATCATCCTGGTGCCAGAGATGGAAATAGTCCATCAATTGCTGCTGTGGTTGCCAGCGTTAATTGGCCAGCTGCAAACCGCTATGCTGCTCGTGTTTGCGCTCAAGATCATCGGACTGAGAAAATTTTAAACTTCGGAGATGTTTGCCTTGAACTTGTTTCATGTTATGAAAGGCTAAACGGAGCCAAGCCTGAGAAGATTGTTATCTTCCGTGACGGGGTCAGTGAAAGCCAATTTCAAATGGTTCTTGGTGAAGAGCTCCAGGATTTGAAGAGGACCTTCCAACGGGCAAATTATTCCCCAACAATCACTCTCATTGTGGCACAAAAGCGACACCAGACTCGATTGTTCCCTTCTCCTCCAGAGAACGAAACAGCAGCTACTCGCGGCAATGTGTTACCTGGAACAGTGGTGGATACAGTAATCATCCATCCCTTTGAATTCGACTTTTACCTGGTTAGTCACCATGGTAGCTTGGGAACAAGTAAGCCCACTCATTACCATGTTTTGTGGGATGAGCACAATTTCACTTCAGATAAACTGCAGAAACTGATATATGACATGTGCTTTATATTTGCGCGGTGCACCAAACCTGTGTCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATACAGAGGGCGTCAGTATTATGAAGCAAAGATGGGGATGCAGTCTCCTTATTCAGCTACATCTTCTTCATCATCACCATTGGCTTCTTCATCCATTTCTTCGGCAACCTCGAGTTCCAATGATGTGGATTTCTACAAGCTGCATTCTGATGTGGAAAATGTGATGTTCTTCGTCTAG 2943 0.4818 MDRGGYNQKRGGYARGDGGHGRARGRGRDFHQPPRQPADSARGRGTAGRGQPTPPQPQWLPRQRNTTAGGTTTTTGSGTAPPNPNPIPLPSNPHPPSQQVVPVPGMGTSSDSAKMISPIRRPDSGGRVAVRTKPLHVNHFPVKFNPKSRIMHYNVDVGPQSPPQPGRPPKRISKTELAMIRDKLFLDHPDSLPLGMTAYDGEKNIFSKVPLPEEPFAVEVSKGEDDRPTGYVVTLTLVNVLEMSKLEDYIRGRALSIPRVILQGVDVVFKENPIKCTVPIGGCFYPMNPKFRETNLQPGVIAVGGFQHTLKPTRQGLSLCLDYSVLSFKKKMPVLDFLHEQIHGFNLREFRRFRKQVESVLIGLKVHVTHRRTKQKYTVSCLTPKDTRQITFPAMDAQGNPAGQLSLVGYFLDRYQIDIRYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKDQLDKYAARSLKEMSLPPPRVRQAAIQEMVNSSCGPCGGGIVENFEMNVSTSMTTVTGRVIGPPKLKLSDPNGRTIPMALTPEKCQWNLVEKSMVDGKAVECWGILDFTMGSDCVFSSYRFVSKLIEKYNKFGITMKEPVCTEKTNMWKLGNYNQLSELLEKINDGVFRRHRRRLQFLLCVMASKDQGYKCLKWIAETKVGIVTQCCLSGNANIAKDQYLTNLALKINAKIGGSNVELVNRLPHFEGDGHVMFIGADVNHPGARDGNSPSIAAVVASVNWPAANRYAARVCAQDHRTEKILNFGDVCLELVSCYERLNGAKPEKIVIFRDGVSESQFQMVLGEELQDLKRTFQRANYSPTITLIVAQKRHQTRLFPSPPENETAATRGNVLPGTVVDTVIIHPFEFDFYLVSHHGSLGTSKPTHYHVLWDEHNFTSDKLQKLIYDMCFIFARCTKPVSLVPPVYYADLAAYRGRQYYEAKMGMQSPYSATSSSSSPLASSSISSATSSSNDVDFYKLHSDVENVMFFV 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241909g00006 980 ProSiteProfiles Piwi domain profile. 629 930 IPR003165 GO:0003676
Stsc241909g00006 980 MobiDBLite consensus disorder prediction 15 35 - -
Stsc241909g00006 980 CDD PAZ_argonaute_like 332 445 - -
Stsc241909g00006 980 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 132 932 - -
Stsc241909g00006 980 SUPERFAMILY Ribonuclease H-like 623 930 IPR012337 -
Stsc241909g00006 980 Gene3D paz domain 327 450 - -
Stsc241909g00006 980 MobiDBLite consensus disorder prediction 81 100 - -
Stsc241909g00006 980 Gene3D - 512 692 - -
Stsc241909g00006 980 ProSiteProfiles PAZ domain profile. 332 446 IPR003100 GO:0005515
Stsc241909g00006 980 MobiDBLite consensus disorder prediction 60 80 - -
Stsc241909g00006 980 CDD Piwi_ago-like 493 929 IPR045246 -
Stsc241909g00006 980 MobiDBLite consensus disorder prediction 1 127 - -
Stsc241909g00006 980 SUPERFAMILY PAZ domain 328 483 IPR036085 GO:0005515
Stsc241909g00006 980 SMART DUF1785_2 278 331 IPR014811 -
Stsc241909g00006 980 Pfam PAZ domain 348 461 IPR003100 GO:0005515
Stsc241909g00006 980 Gene3D - 699 980 IPR036397 GO:0003676
Stsc241909g00006 980 Pfam N-terminal domain of argonaute 134 268 IPR032474 -
Stsc241909g00006 980 Pfam Piwi domain 630 929 IPR003165 GO:0003676
Stsc241909g00006 980 SMART Piwi_a_2 629 930 IPR003165 GO:0003676
Stsc241909g00006 980 Pfam Argonaute linker 1 domain 280 328 IPR014811 -
Stsc241909g00006 980 SMART PAZ_2_a_3 332 468 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241909g00006 Stsc-Chr241909 47297 51576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241909g00006 96 979 Eukaryotic Initiation Factors Gene Family AT1G48410 34.449 1.62e-144 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241909g00006 K11593 - gmx:100805250 1216.83