Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241908g00005 ATGAGGAAGTTCCTGGTTATAGCTTTATCTACAACAATATGCTTCATCGCTTTCGTGATATCCAAGATCTTGATCTCCATTCTTCTATACAAAAGATGGAAAAGAAAGCACATGATTTATGAAAATGAAGGGAAGATGGTAATCTTTAGATCTTCATTGCTGCAATCTCTCGAATCCGAATCAGTCTTACAGAAGACACAAAAACTGACTAACAAAGACATCATTGGGTCTGGTGGCTATGGTGTGGTCTATGAACTAAGGCTAAATGAATCTTTAGCCTTCGCCGTGAAGAGGCTGAACCGCGGAACAGAAGAGAGGGACAATGGTTTCGAGAGAGAGTTGGAGGCGATGGCGGACATAAAGCATCGAAACATTGTAACTCTTCATGGATATTACACTGCACCACACTACAATCTTCTTATATATGAGCTAATGCCAAATGGAAGTTTGGATTCCATTTTGCATGGGAGATCAAAGGAGCAGAAGCATTTGGATTGGCCAACAAGATATAGAGTAGCTGTAGGTGCTGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATTATCCACAGAGATATCAAATCAAGCAACATATTGCTTGATCAAAACATGGAGGCAAGAGTTTCTGACTTCGGATTAGCAACATTGATGGAGCCGAATAAGACTCATGTTTCGACGATCGTAGCAGGAACTTTCGGATACTTGGCACCTGAATATTTCGATACAGGCAGAGCAACGGTTAAAGGCGATGTTTACAGCTTTGGAGTAGTGTTACTGGAGCTCTTAACTGGCAAGAAACCTAGTGATGAAGCATTTCTAGAAGAAGGAACCAAGCTTGTCACATGGGTGAAGGCTGTTGTTCAGGAGAAGAAAGAGGAGTTAGTTCTTGACAGTAGCTTAGGGTCTTGTCCAATGCAAGAGGTAAACAAGGTGTTCAGCATTGCAATGATGTGTCTTGAACCAGACCCCTTGAATAGACCCAACATGGCTGAGGTTGTCAACTTGCTTGAACAAGCAGTATCAGGCAAACATGTTACTACAGCATGTACACCTAATGATATATCACTCTAA 1080 0.4157 MRKFLVIALSTTICFIAFVISKILISILLYKRWKRKHMIYENEGKMVIFRSSLLQSLESESVLQKTQKLTNKDIIGSGGYGVVYELRLNESLAFAVKRLNRGTEERDNGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDSILHGRSKEQKHLDWPTRYRVAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDEAFLEEGTKLVTWVKAVVQEKKEELVLDSSLGSCPMQEVNKVFSIAMMCLEPDPLNRPNMAEVVNLLEQAVSGKHVTTACTPNDISL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241908g00005 359 SMART serkin_6 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241908g00005 359 Pfam Protein tyrosine and serine/threonine kinase 70 339 IPR001245 GO:0004672|GO:0006468
Stsc241908g00005 359 Gene3D Phosphorylase Kinase; domain 1 30 144 - -
Stsc241908g00005 359 SUPERFAMILY Protein kinase-like (PK-like) 54 340 IPR011009 -
Stsc241908g00005 359 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Stsc241908g00005 359 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 145 351 - -
Stsc241908g00005 359 FunFam Receptor-like serine/threonine-protein kinase 40 144 - -
Stsc241908g00005 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc241908g00005 359 ProSiteProfiles Protein kinase domain profile. 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241908g00005 359 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 8 340 - -
Stsc241908g00005 359 Gene3D Transferase(Phosphotransferase) domain 1 145 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241908g00005 Stsc-Chr241908 15232 17020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241908g00005 3 343 Receptor kinase-like Gene Family AT2G35620 45.376 3.96e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Stsc241908g00005 PK_Tyr_Ser-Thr 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241908g00005 - - ahf:112703495 657.521