Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241905g00009 ATGGTGAAGGACAGAATCATCAACAATGGCAGTGGAAATGGAACTAACAATAACAATAATAATAATAAGAGTAAGCTAAGGAAAGGGCTGTGGTCACCGGAGGAAGATGAGAAGCTGATAAGGTACATGATAACCAAGGGACAAGGTTGTTGGAGTGATATTGCTAGAAATGCCGGGTTACAGCGCTGTGGCAAGAGCTGCCGCCTTCGATGGATAAACTACCTCCGGCCGGATCTCAAGCGTGGCGCCTTTTCCCTCCAAGAGGAAGAGCTCATCATTCACTTGCACTCCATTCTTGGCAACAGATGGTCACAGATTGCGGCACGTCTACCCGGACGCACTGACAACGAAATCAAGAACTTTTGGAATTCCACTGTCAAGAAACGGTTAAAACTCAACCCCAACAACTCAACTTCTTCACCAAACAACAGCGACTCATCAGAGCCTCTTAGCATCACCATGGAGGACAACAATCTTCTCATGCCCACAACTAACAGTAATGCTATCATGCCCTTCAATGATCCTCATCATGATCTCATGTCCATATCCATGTGCATGGACAACTCATCCTCATCAACATCATCCTCAACCATGCATACCCATCATCATCCCATGGTCTTTGGCGACCCCTTTTCCATGTTAAACAACAACAACAATAATCAGTATGAGACGGCGACCGGTGTAGCCGGTTTCCATGGTTTTCATGGCGGCGACTACGGTGGGATGTTGGAGGAGGAGACTACTAATAAAATGGGGTTATTAGAAGGTGAGTTGTCCCTTCCTCCATTAGAAAGTAGTATTAGAAGAAGCAATGAAGAAGAAGAGATCATTATTATTAATAACGAAAATGCCTCGTCATCAATTGATGACATGAAAAGCCATAACAACAACCACTTCAATAATAACAATAATAGTTGCTTCAATAACACTACTGAAAATAATAATAATAATAATAATAATCAGGTTCTGAATAACAACAACTACTCCTCCTCCAATGTAGTAGAAGAGGATTTGTTTGGGTTTGGAAATCATGACCACCAAGTGGAAAACTTAAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATTTCCTATTTTCCTTCCCTTGATTTCCAAGTTTGA 1128 0.422 MVKDRIINNGSGNGTNNNNNNNKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSLQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTVKKRLKLNPNNSTSSPNNSDSSEPLSITMEDNNLLMPTTNSNAIMPFNDPHHDLMSISMCMDNSSSSTSSSTMHTHHHPMVFGDPFSMLNNNNNNQYETATGVAGFHGFHGGDYGGMLEEETTNKMGLLEGELSLPPLESSIRRSNEEEEIIIINNENASSSIDDMKSHNNNHFNNNNNSCFNNTTENNNNNNNNQVLNNNNYSSSNVVEEDLFGFGNHDHQVENLRMGEWDFEGLMQDISYFPSLDFQV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241905g00009 375 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Stsc241905g00009 375 Gene3D - 25 81 - -
Stsc241905g00009 375 Gene3D - 82 150 - -
Stsc241905g00009 375 SMART sant 80 128 IPR001005 -
Stsc241905g00009 375 SMART sant 27 77 IPR001005 -
Stsc241905g00009 375 FunFam MYB transcription factor 25 81 - -
Stsc241905g00009 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Stsc241905g00009 375 FunFam Transcription factor MYB46 82 152 - -
Stsc241905g00009 375 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Stsc241905g00009 375 MobiDBLite consensus disorder prediction 131 151 - -
Stsc241905g00009 375 PANTHER MYB DOMAIN PROTEIN 55 20 331 - -
Stsc241905g00009 375 CDD SANT 83 126 IPR001005 -
Stsc241905g00009 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Stsc241905g00009 375 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Stsc241905g00009 375 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Stsc241905g00009 375 MobiDBLite consensus disorder prediction 1 28 - -
Stsc241905g00009 375 MobiDBLite consensus disorder prediction 8 27 - -
Stsc241905g00009 375 CDD SANT 31 75 IPR001005 -
Stsc241905g00009 375 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241905g00009 Stsc-Chr241905 59663 64102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241905g00009 20 375 MYB Transcription Factor Family AT3G08500 45.205 1.15e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241905g00009 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241905g00009 K09422 - gmx:100796379 317.775