Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241904g00003 ATGCCATCAAACCGTGGACGTGGCCACCATCCCCGCTCAATTTGGAGCAAGCTATGTTTCTCTAACCCAAGTTGGGATTCAGATGATGATGATTTAGAGTTAGATCATATATTCTATGTTTATAGTCCAGCGCCATCTGTTCAAATTCATCAACCACCACCACCACCAGAACCTGAATCTGACTTGGAATTTCCATCATCCCAACAGCTGCCACCTCCGCCACCGCCACCGCCACCACCACCACTACCACTGATGCCTTCTCCGGTTGTTCATGGCAGGAGGATGGCTAATGAAGCTGTAAGAACCATTGGGTTGATTGACATCTTTTCTGAGCAACTGAGGGACCAACTATCTAACTGCCCAATCTGTACGGACGAGTTTGAAATGGGAGAGATTGTGTGCATGCTGCCCTGCAACCATGCCTTTTGTTTTTCCTGCATCAATCGCTGGCTGGAAACCAGTCTTACCTGCCCAGTTTGCCGGAAGGAGTTGGGTAACAATGTTTCTCATCGCCACATCTGGGGAGACTATTTTTCGCGGCATGGGGAAGAATTTGAAGCATTTAACAGAGCTGTGAGTGATGAAAACTCAGAGGAAGATGAGCAGTATGACAGTGCAAATGATGAGATTGATGATGATTTCATTATGGAGAGAATTCGGATACTGTAG 669 0.4679 MPSNRGRGHHPRSIWSKLCFSNPSWDSDDDDLELDHIFYVYSPAPSVQIHQPPPPPEPESDLEFPSSQQLPPPPPPPPPPPLPLMPSPVVHGRRMANEAVRTIGLIDIFSEQLRDQLSNCPICTDEFEMGEIVCMLPCNHAFCFSCINRWLETSLTCPVCRKELGNNVSHRHIWGDYFSRHGEEFEAFNRAVSDENSEEDEQYDSANDEIDDDFIMERIRIL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241904g00003 222 SUPERFAMILY Formin homology 2 domain (FH2 domain) 71 81 - -
Stsc241904g00003 222 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Stsc241904g00003 222 SMART ring_2 120 160 IPR001841 -
Stsc241904g00003 222 Pfam Ring finger domain 119 161 IPR001841 -
Stsc241904g00003 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 169 IPR013083 -
Stsc241904g00003 222 MobiDBLite consensus disorder prediction 47 87 - -
Stsc241904g00003 222 CDD RING-H2_PA-TM-RING 120 161 - -
Stsc241904g00003 222 Coils Coil 189 209 - -
Stsc241904g00003 222 PANTHER TARGET OF ERK KINASE MPK-1 116 166 - -
Stsc241904g00003 222 MobiDBLite consensus disorder prediction 45 89 - -
Stsc241904g00003 222 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Stsc241904g00003 222 SUPERFAMILY RING/U-box 119 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241904g00003 Stsc-Chr241904 45409 46289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241904g00003 21 173 C3H Transcription Factor Family AT1G68180 30.719 2.94e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241904g00003 K11982 - tpra:123908673 87.4261