Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241903g00015 ATGAGTGGTGGTGGTAGTGCCTCAAGTAGTCTATCATTTGAAGAGATCATAAGCTTCAATGGTGGTCAATCTTGTGATCATAGCTCCAAAGAGGGTAGTTTAGGGAATAATAATAATAATAATAATAGTAAGAGAAGAACAAAGAAGGGAAGAAACTCAAGAGAGGCATTGGATCACATAATATCAGAGAGGAGAAGGAGACAACAATTGGCTGAGAAGTTCATAGCACTTGCAGCTGCTATTCCTGGCTTGAAGAAGATAGACAAGGCATCTATACTTGAAGAAGCCACCAATTATGTGAGACAACTTGAAGAACACATAGCACTGCTTGAGAAAGAGAACAACAACAAAAAAGAACCATTGATTGTGAAGAAATCATCACAATTTTGTAGTTCTTCTCTTCTTCAATGTGATGACAAAAACAATAAAATGGTCCCACCAGAAGTGGAAGCTAGATGGTTAGAAAAAGAAGTACTAATTAGAATCCAGTGTGAGAAACAAAAGGGAATAATGTTGAAGCTCTTGCCACTTTTGCAAAATAATCATCTCTCTCTGGTTGGTAGCACCTTATTGCCTTTTGGAAACTCTACTCTCAATGTTATCATCATTATTGCTCAGATGAATGAGGGATTCAACTTAACATTGTACGATCTGGTGAAGATGTTGAGGGAGGATCTAATAAAGTTTATGAGATGA 696 0.3707 MSGGGSASSSLSFEEIISFNGGQSCDHSSKEGSLGNNNNNNNSKRRTKKGRNSREALDHIISERRRRQQLAEKFIALAAAIPGLKKIDKASILEEATNYVRQLEEHIALLEKENNNKKEPLIVKKSSQFCSSSLLQCDDKNNKMVPPEVEARWLEKEVLIRIQCEKQKGIMLKLLPLLQNNHLSLVGSTLLPFGNSTLNVIIIIAQMNEGFNLTLYDLVKMLREDLIKFMR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241903g00015 231 PANTHER BHLH TRANSCRIPTION FACTOR 8 228 - -
Stsc241903g00015 231 SMART finulus 60 109 IPR011598 GO:0046983
Stsc241903g00015 231 Gene3D - 51 126 IPR036638 GO:0046983
Stsc241903g00015 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Stsc241903g00015 231 Coils Coil 93 116 - -
Stsc241903g00015 231 MobiDBLite consensus disorder prediction 24 55 - -
Stsc241903g00015 231 Pfam Helix-loop-helix DNA-binding domain 59 104 IPR011598 GO:0046983
Stsc241903g00015 231 MobiDBLite consensus disorder prediction 24 43 - -
Stsc241903g00015 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 120 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241903g00015 Stsc-Chr241903 57261 60118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241903g00015 39 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.801 8.81e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241903g00015 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241903g00015 - - ahf:112712745 263.462