Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241903g00014 ATGGAAATGGATCATGAGAAGAGCATTAATAATAATAATAATAATAATTTCTTATTAGAAAATAATGAATATGGTGATGATGAGAATGAAGATGATGATGTGTTCTTAAGAGAAATCTTAATGTTACAACCATCTCTCTCTTCTGAAAATAGTGAAAATAATGAACATCATCATCATCTAAATTCTTCATCTTCCACACATATTCCCCAAACCACCACCGTTGGATCATCAAAAGAGATTGAAGCTCCACAAGATCTAACGGCTGAGAACAACAACAAGAACAAGAAGAAGAACAACAACAATGGTAGATCATCATCATCATCTTCTCCAAGGAGATACATTTTGTCATTTGATAACTCAACCATGACACCAGCCACACCAAGTCAATTACAAGAAGACCCTTCTTATTATTATGCAAACAATAACAACAACAATAATAAGAAGAACAAGAGGAACAAAGAGAAATCAACAACAACATGTTGTGGTGATGATGATTATTCTCCGAAATTGTCTTGTTCTTCTTCAAAAAGGGCCATGCCCATTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGAGGAGGAGGAAGGGGAAATAATAACAACAAAAAGGGCAAGAAGCTCTTCACAAACAATGGATCACATAATGGCAGAGAGAAAGAGGAGACAAGAACTCACTGAGAAGTTCATAGCACTTTCAGCTACCATCCCTGGCTTGACCAAGACAGACAAGGCATCAATACTTAGAGCAGCCATAGATTATGTGAAGCAACTTCAAGAAAGGGTGCAAGAATTAGAAAAGGAAGAAAATAAGAGGAGCAGAGAGTCACTGATAATGGTGAAGAAATCAAAGAATAATAATAATAATAATAGTGAGGAATTATTAATAGAAGAGAGCACACTAATATCAAGTGATGATCATGAACATGGTGGAATGGTTGAGCCTGATATTGAAGCAAGAGTAATGGGGAAAGATGTTCTGATTGAGATACACTGTGAGAAAGAGAATGGCATTGAGATGAAAATACTTAACCAGCTTGAAAATCTTCATCTTTTTGTCACCGGTAGTAGTGTTCTTCCTTTTGGCAATTCAGCTCTTGGGATTACTATTATTGCTAAGATGGGAGAATCATGCGAAATAAGAGTGAATGATGTGGTGAGAAACCTTAGGCAAGTGTTGTTGAAGCCACATCACATGGCCTTCAAAAAGTGA 1230 0.348 MEMDHEKSINNNNNNNFLLENNEYGDDENEDDDVFLREILMLQPSLSSENSENNEHHHHLNSSSSTHIPQTTTVGSSKEIEAPQDLTAENNNKNKKKNNNNGRSSSSSSPRRYILSFDNSTMTPATPSQLQEDPSYYYANNNNNNNKKNKRNKEKSTTTCCGDDDYSPKLSCSSSKRAMPINNNNNNNNNNNNNNNNKEEEEGEIITTKRARSSSQTMDHIMAERKRRQELTEKFIALSATIPGLTKTDKASILRAAIDYVKQLQERVQELEKEENKRSRESLIMVKKSKNNNNNNSEELLIEESTLISSDDHEHGGMVEPDIEARVMGKDVLIEIHCEKENGIEMKILNQLENLHLFVTGSSVLPFGNSALGITIIAKMGESCEIRVNDVVRNLRQVLLKPHHMAFKK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241903g00014 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 280 IPR036638 GO:0046983
Stsc241903g00014 409 MobiDBLite consensus disorder prediction 1 29 - -
Stsc241903g00014 409 Coils Coil 254 281 - -
Stsc241903g00014 409 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Stsc241903g00014 409 Coils Coil 181 204 - -
Stsc241903g00014 409 MobiDBLite consensus disorder prediction 63 146 - -
Stsc241903g00014 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Stsc241903g00014 409 PANTHER BHLH TRANSCRIPTION FACTOR 47 401 - -
Stsc241903g00014 409 SMART finulus 221 270 IPR011598 GO:0046983
Stsc241903g00014 409 MobiDBLite consensus disorder prediction 8 22 - -
Stsc241903g00014 409 MobiDBLite consensus disorder prediction 161 196 - -
Stsc241903g00014 409 Gene3D - 212 290 IPR036638 GO:0046983
Stsc241903g00014 409 MobiDBLite consensus disorder prediction 47 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241903g00014 Stsc-Chr241903 43539 48208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241903g00014 208 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.918 3.37e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241903g00014 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241903g00014 - - ahf:112779544 399.823