Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241900g00008 ATGGCGAAAAAGTATGAAGGGCATGCAGTGGGAATCGACCTTGGCACCACATACTCTTGTGTTGGCGTATGGCAGGAGCAACATTGTCGTGTTGAGATCATTCATAATGATCAGGGCAACAAAACAACACCTTCCTACGTTGCATTCACTGAGAATCAAAGATTAATTGGAGATGCTGCTAAGAACCAGGCTGCCGCTAACCCAACTAACACTGTTTTTGATGCTAAGAGATTGATTGGTAGAAAATACAGTGATCCGATTGTCAAGAATGATATCCTGATGTGGCCATTTAAGGTCACTGCTGACATTGATGATAAACCAATGATTGTTGTTACATACAAGGACCAAGAGAAGCAATTTTCTGCAGAAGAAATCTCATCTATGGTTCTCACTAAGATGCGAGAGATTGCAGAGGCATTCTTAGAGTCACCTGTTCGTAATGCTGTTATTACTGTACCTGCTTATTTCAATGGCTCTCAGCGCAAAGCTACCAGAGATGCTGGCGCCATTGCAGGTCTCAACTTGATGCGAATAATTAGTGAGCCAACCGCTGCGGCTATTGCATATGGCCTTTATAAGAGATTGGATTGCACTACTGAGCGTAATATCTTCATCTTTGATCTTGGAGGTGGTACTTTTGATGCGTCTCTCCTTACTATTAAGGGTAAGGAATTCAAGCGAAAGAACAAGGCTGACATTAGTGGCAATGCCAGAGCCCTAAGGAGACTGAGAACTGCTTGTGAGAAGGCAAAGAGGACTTTATCTTATGCCGTTACTGCAACCATTGAGTTAGATGCTTTCTTTACAGGAATTGACTTCTATTCATCAATCAGTCGTGCTAGATTCGAAGAACTTAATTCGGATCTCTTTAAAGAGTGCTTGGAAACGGTAGACCATTGCCTCGCTGATGCAAAAATGGACAAGGCAAGTGTACATGATGTGGTGCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGGAGTTGTTGCAAGAATTTTTCAAGGGAAAGGAGCTTTGTAAGAGCATCAATCCTGATGAAGCTGTTGCTTATGGCGCAGCTGTTACTGCTGCTTTGTTGAATGGAGGCACTAAGAGTACTGCCCCAGATTTGGTGCTGCAGGATGTTACCCCTCTGTCCCTTGGTCAAGGGATAATAGGAGATGTCATGAGCGTTGTGATTCCAAGGAATACTTCCATTCCTGTAAAGAAGTCAGCGACTTTTGTCACGGTCGATGACAATCAATCATATATGCTTCTAAAGATTTACGAGGGTGAAAGGGCAAGAGCCAGCGATAACAACTTGCTCGGTCAATTTACAGTTTCAGGAATCCGTCCTGCTCCTAAAGGTCATCCTATATTGACATGCTTTGAGTTAGACGCCGATGGCATCCTTTGTGTAACTGGGGAGGATAAGACCACTGGTAATAAAAATCAGAATATCATAACAAATGATAAAGGAAAATTGTCGCAGGAAGAAATCCAAAGGCTCGTTGAGGAAGCTGAGAGATACAAGGTTGAGGATGAGAAGTTTCTGAAGAAAGCTAAAGCAATACGTGCTTTGGATGATTATGTTTATGACATGGAGAAAGCCTTAAACTGTTCTAAGCTTTGTCCTGAGGATAAGAAGAAGCTACATTCTGCAATTGATAAGGTCAGAAATCTGCTTGATGATGGTAACCAGGAGAACATAGAAATTCACGTGTTTGTGGAGTACCTTAATGAAGCTAAGCTCATTTTTGAGCCCATTAAAGCTAAGACTTGTTAG 1767 0.4233 MAKKYEGHAVGIDLGTTYSCVGVWQEQHCRVEIIHNDQGNKTTPSYVAFTENQRLIGDAAKNQAAANPTNTVFDAKRLIGRKYSDPIVKNDILMWPFKVTADIDDKPMIVVTYKDQEKQFSAEEISSMVLTKMREIAEAFLESPVRNAVITVPAYFNGSQRKATRDAGAIAGLNLMRIISEPTAAAIAYGLYKRLDCTTERNIFIFDLGGGTFDASLLTIKGKEFKRKNKADISGNARALRRLRTACEKAKRTLSYAVTATIELDAFFTGIDFYSSISRARFEELNSDLFKECLETVDHCLADAKMDKASVHDVVLVGGSSRIPKVQELLQEFFKGKELCKSINPDEAVAYGAAVTAALLNGGTKSTAPDLVLQDVTPLSLGQGIIGDVMSVVIPRNTSIPVKKSATFVTVDDNQSYMLLKIYEGERARASDNNLLGQFTVSGIRPAPKGHPILTCFELDADGILCVTGEDKTTGNKNQNIITNDKGKLSQEEIQRLVEEAERYKVEDEKFLKKAKAIRALDDYVYDMEKALNCSKLCPEDKKKLHSAIDKVRNLLDDGNQENIEIHVFVEYLNEAKLIFEPIKAKTC 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241900g00008 588 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc241900g00008 588 FunFam Heat shock 70 kDa 209 292 - -
Stsc241900g00008 588 Pfam Hsp70 protein 9 221 IPR013126 GO:0005524|GO:0140662
Stsc241900g00008 588 Pfam Hsp70 protein 223 566 IPR013126 GO:0005524|GO:0140662
Stsc241900g00008 588 Coils Coil 487 507 - -
Stsc241900g00008 588 Gene3D - 518 588 IPR029048 -
Stsc241900g00008 588 PANTHER HEAT SHOCK PROTEIN 70KDA 9 550 IPR013126 GO:0005524|GO:0140662
Stsc241900g00008 588 FunFam Heat shock 70 kDa protein 364 518 - -
Stsc241900g00008 588 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 366 517 IPR029047 -
Stsc241900g00008 588 FunFam Heat shock protein 70 10 202 - -
Stsc241900g00008 588 ProSitePatterns Heat shock hsp70 proteins family signature 3. 314 328 IPR018181 -
Stsc241900g00008 588 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc241900g00008 588 Gene3D - 194 224 - -
Stsc241900g00008 588 Gene3D Actin; Chain A, domain 4 225 292 - -
Stsc241900g00008 588 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 369 517 IPR029047 -
Stsc241900g00008 588 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc241900g00008 588 Gene3D - 10 193 - -
Stsc241900g00008 588 Gene3D - 293 340 - -
Stsc241900g00008 588 Gene3D - 73 128 - -
Stsc241900g00008 588 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Stsc241900g00008 588 SUPERFAMILY Actin-like ATPase domain 199 360 IPR043129 -
Stsc241900g00008 588 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 489 585 IPR029048 -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 343 363 - -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 450 466 - -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 370 389 - -
Stsc241900g00008 588 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc241900g00008 588 Gene3D - 341 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241900g00008 Stsc-Chr241900 43172 45412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241900g00008 1 586 Calmodulin-binding Proteins AT3G12580 63.328 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241900g00008 K03283 - gmx:102667578 793.112