Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241900g00007 ATGGCGAAAAAGTATCAAGGACATGCAGTGGGAATTGACCTTGGCACGACATACTCTTGTGTTGGCGTATGGCAGGAGCAACATTGTCGTGTTGAGATCATTCATAATGATCAGGGCAACAGAACAACACCTTCTTGCGTTGCATTCACTGAGAATCAAAGATTAATTGGAGATGCTGCTAAGAACCAGGCTGCCGCTAACCCAACTAACACTGTCTTTGATGCTAAGAGATTGATCTGTAGAAAATATAGTGATCCTATTGTCAAGAATGATATCCTGATGTGGCCATTTAAGGTCACTGCTGGTATCGATGATAAACCAATGATTGTTGTTACCTACAAGGATCAGGAGAAGCACTTTTCTGCAGAAGAAATCTCATCTATGGTTCTCACTAAGATGCGACAGATTGCAGAGGCATTCTTAGAGTCACCTGTTTGTAATGCTGTTATTACTGTACCTGCTTATTTCAATGGCTCTCAGCGCAAAGCTACCAGAGATGCTGGTGCCATTGCAGGTCTCAACGTGATGCGAATAATTAGTGAGCCAACCGCTGCGGCTATTGCATACGGCCTTTACAAGAGATTGGATTGCGCTGGCGAGCGCAATATCTTCATCTTTGATCTTGGAGGTGGTACTTTTGACGTGTCTCTCCTTACTATTAAGGGTAAGGTCTTCCAAGTTAAGGCTACTGCTGGAAACACTCACCTCGGAGGAGAAGATTTTGATAACAGAGTAGTGAGTTACTTTGTCAAGGAATTCAATAGAAAGAATAAGGTTGACATTAGTGGCAATGCCAGAGCCTTAAGGAGACTGAGAACTGCTTGTGAGAAGGCCAAGAGGACTTTATCTTATGCCGTTACTGCCACCATTGAGTTAGATGCTTTCTTTACAGGAATTGACTTCTATTCATCAATCAGTCGTGCTAGATTCGAAGAACTTAATTCGGACCTCTTTAGAGAGTGCTTGGAAACGGTAGACCAATGTCTCACTGATGCAAAAATGGACAAGGCAAGTGTACATGATGTGGTGCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGGAGTTGTTGCAAGAATTTTTTGAGGGAAAGGAGCTCTATAAGAGCATCAATCCTGATGAAGCTGTTGCATATGGCGCGGCTGTTACGGCTGCTTTGTTGAAAGGTGCCAGTGAGAGCACTGCCCCAGACTTGGTGCTGCAGGATGTTACTCCTTTGTCTCTTGGTGAAGCGGAAATAGGAGATGTCATGTGCGTTGTGATTCCAAGGAATACTACCATTCCTATAAAGAAGTCACAGATTTTTGAGCCTGTCTATGATAACCAGTCATATATGTTTATAGAGATTTACGAGGGTGAAAGGACAAGAGCAAGCGATAACAACTTGCTCGGTCATTTCACACTTTCAGGAATCCCTCCTGCTCCTAAAGGCCATCCTATATTCACATGCTTTGAGTTAGATGCCGATGGAATCCTTTGTGTAACTGCTGAGGAAAAGACCACTGGTAATAAAAATCAGATTACCATAACAAATGATAAAGGAAAATTGTCACAGGAAGAAATCGAAAGGCTCATTGAGGAAGCGGAGAGATACAAGGTTGAAGATGAGAAGTTTCTTGAGAAAGCTAATGCAATACGTGCTTTGGATGATTATGTCTATGACATGGAGAAAGCCTTAATCGGTTCAAAGCTTTGTCCTGAGGATAAGAAGAAGCTAAATTCTGCAATTGATAAGGCTAGAACTGTGCTTGATGATGGTAACAAGGAAAACATAGAAATTCACGTGTTTGTGGAGTATCTTAACGAAGCTAAGCTCATTTTTGAGCCCATTATAGCTAAGACAGATTAG 1851 0.4225 MAKKYQGHAVGIDLGTTYSCVGVWQEQHCRVEIIHNDQGNRTTPSCVAFTENQRLIGDAAKNQAAANPTNTVFDAKRLICRKYSDPIVKNDILMWPFKVTAGIDDKPMIVVTYKDQEKHFSAEEISSMVLTKMRQIAEAFLESPVCNAVITVPAYFNGSQRKATRDAGAIAGLNVMRIISEPTAAAIAYGLYKRLDCAGERNIFIFDLGGGTFDVSLLTIKGKVFQVKATAGNTHLGGEDFDNRVVSYFVKEFNRKNKVDISGNARALRRLRTACEKAKRTLSYAVTATIELDAFFTGIDFYSSISRARFEELNSDLFRECLETVDQCLTDAKMDKASVHDVVLVGGSSRIPKVQELLQEFFEGKELYKSINPDEAVAYGAAVTAALLKGASESTAPDLVLQDVTPLSLGEAEIGDVMCVVIPRNTTIPIKKSQIFEPVYDNQSYMFIEIYEGERTRASDNNLLGHFTLSGIPPAPKGHPIFTCFELDADGILCVTAEEKTTGNKNQITITNDKGKLSQEEIERLIEEAERYKVEDEKFLEKANAIRALDDYVYDMEKALIGSKLCPEDKKKLNSAIDKARTVLDDGNKENIEIHVFVEYLNEAKLIFEPIIAKTD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241900g00007 616 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc241900g00007 616 FunFam Heat shock protein 70 10 202 - -
Stsc241900g00007 616 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 546 IPR029047 -
Stsc241900g00007 616 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc241900g00007 616 Gene3D - 10 386 - -
Stsc241900g00007 616 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc241900g00007 616 FunFam Heat shock 70 kDa protein 392 546 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 398 417 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc241900g00007 616 PRINTS 70kDa heat shock protein signature 478 494 - -
Stsc241900g00007 616 FunFam Heat shock 70 kDa 237 320 - -
Stsc241900g00007 616 Pfam Hsp70 protein 9 594 IPR013126 GO:0005524|GO:0140662
Stsc241900g00007 616 Gene3D - 194 368 - -
Stsc241900g00007 616 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 546 IPR029047 -
Stsc241900g00007 616 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc241900g00007 616 Gene3D - 73 128 - -
Stsc241900g00007 616 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Stsc241900g00007 616 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc241900g00007 616 Gene3D - 547 616 IPR029048 -
Stsc241900g00007 616 PANTHER HEAT SHOCK PROTEIN 70KDA 9 579 IPR013126 GO:0005524|GO:0140662
Stsc241900g00007 616 Coils Coil 515 542 - -
Stsc241900g00007 616 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 517 614 IPR029048 -
Stsc241900g00007 616 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241900g00007 Stsc-Chr241900 25696 28328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241900g00007 1 614 Calmodulin-binding Proteins AT3G12580 67.528 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241900g00007 K03283 - gmx:102667578 859.366